PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G049700.2 | ||||||||
Common Name | POPTR_0006s04820g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 432aa MW: 47356.7 Da PI: 8.4196 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.7 | 2.8e-13 | 79 | 135 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g Potri.006G049700.2 79 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 135 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.2E-9 | 79 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-15 | 79 | 144 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-12 | 80 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.518 | 80 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-19 | 80 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 125 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MASSSDPVLK PEIGGGVCGG GSGGCGGGGG GGESSEAAVI ANDQLLLYRG LKKPRKERGC 60 TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQGAYDDEE 120 AAARAYDLAA LKYWGPGTLI NFPVTDYTRD LEEMQNVSRE EYLASLRRKS SGFSRGISKY 180 RALSSRWDSS YSRVPGSEYF SNVNYGAGDD QAAESEYSFC IERKIDLTGY IKWWGSNKTS 240 LAESMTKSSE DTKHGCADDI GSELKTTERE VQCTEPYQMP RLGLSVEGKR HKGSKISALS 300 ILSQSAAYKN LQEKASKKQE TVTENDENEN RNNINKMDHG KAVEKSTSHD SNSERLGAAL 360 GMTGGLSLQR NVPLTPFLSA PLLTNYNTID PLVDPILWTS LVPALPTGLS RNPEVTKTET 420 SSTYSFFRPE E* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G049700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217587 | 0.0 | AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458884.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X4 | ||||
Swissprot | Q8GWK2 | 1e-168 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A3N7F191 | 0.0 | A0A3N7F191_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s04820.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-158 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G049700.2 |
Entrez Gene | 7496130 |