PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G049700.1
Common NamePOPTR_0006s04820g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 433aa    MW: 47604 Da    PI: 8.4161
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G049700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1779138155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Potri.006G049700.1  79 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 138
                         57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-1779147IPR016177DNA-binding domain
PfamPF008476.6E-1379138IPR001471AP2/ERF domain
SMARTSM003801.9E-2580152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1580147IPR001471AP2/ERF domain
PROSITE profilePS5103220.12680146IPR001471AP2/ERF domain
PRINTSPR003674.3E-58192IPR001471AP2/ERF domain
PRINTSPR003674.3E-5128148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MASSSDPVLK PEIGGGVCGG GSGGCGGGGG GGESSEAAVI ANDQLLLYRG LKKPRKERGC  60
TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQVYLGAYD  120
DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNV SREEYLASLR RKSSGFSRGI  180
SKYRALSSRW DSSYSRVPGS EYFSNVNYGD DQAAESEYSF CIERKIDLTG YIKWWGSNKT  240
SLAESMTKSS EDTKHGCADD IGSELKTTER EVQCTEPYQM PRLGLSVEGK RHKGSKISAL  300
SILSQSAAYK NLQEKASKKQ ETVTENDENE NRNNINKMDH GKAVEKSTSH DSNSERLGAA  360
LGMTGGLSLQ RNVPLTPFLS APLLTNYNTI DPLVDPILWT SLVPALPTGL SRNPEVTKTE  420
TSSTYSFFRP EE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G049700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175870.0AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458885.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X5
SwissprotQ8GWK21e-169AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2K1ZWZ00.0A0A2K1ZWZ0_POPTR; Uncharacterized protein
STRINGPOPTR_0006s04820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Representative plantOGRP91071013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-159AP2 family protein