PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G039000.1
Common NamePOPTR_0006s03720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 471aa    MW: 52000.9 Da    PI: 7.1409
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G039000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.5e-10185227547
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                         k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L+k
  Potri.006G039000.1 185 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQK 227
                         788*************************988888887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-8181244IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438183227IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-7185228No hitNo description
PfamPF001701.8E-7185227IPR004827Basic-leucine zipper domain
CDDcd147089.72E-21185237No hitNo description
Gene3DG3DSA:1.20.5.1708.5E-8186230No hitNo description
PROSITE patternPS000360188203IPR004827Basic-leucine zipper domain
PfamPF141442.9E-31267342IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGSRTHNNFN NNNNNNKAVT EMPSYVPQLS TSNPIGTEAN NIHPSRVSDF ATFEQSLGFR  60
IDDAVDLSRN SIFNQLKSSS QAIGADVQFG TLNKSLASSD INLSAAIVGS QTLPLQKEVQ  120
VNPVSIHSNH PENWGETNMA EASPRTDTST DDTDEKNQRF ERGQLVAIAA SDSSDKSKER  180
AGDQKTLRRL AQNREAARKS RLRKKAYVQQ LESSRLKLTQ LEQELQKARQ QGIFISSSGD  240
QTHSMSGNGA LAFDAEYARW LEEHNRQISE LRAAVNSHAG DTELRTIVDN VASHFSDVFR  300
LKGTAAKADV FHILSGMWKT PAERCFMWIG GFRSSELLKL LVNQLEPLTE QQLMGIYNLQ  360
QSSQQAEDAL SQGMEALQQS LAETLANGNP GSSGSSGNVA NYMGQMAMAM GKLGTLEGFL  420
RQADNLRQQT LEQMHRILTT RQSARALLAI HDYFSRLRAL SSLWLARPQE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.2080.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G039000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1951200.0EF195120.1 Populus tremula x Populus alba TGA transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459464.10.0transcription factor TGA2.3 isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLB9H9250.0B9H925_POPTR; BZIP family protein
STRINGPOPTR_0006s03720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-144bZIP family protein