PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.006G034900.1 | ||||||||
Common Name | POPTR_0006s03340g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 319aa MW: 34337.3 Da PI: 6.8036 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.7 | 8.5e-31 | 114 | 167 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Potri.006G034900.1 114 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMNVDGLTRENVASHLQKYRL 167 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.298 | 111 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.58E-20 | 111 | 171 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-31 | 113 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-24 | 115 | 167 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-8 | 117 | 166 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MREDDSNWFS RWEEELPSLE ELMPLSQTLI TPDLALAFDI TNPSNTTTTT TTNNHNSSLH 60 QNQPLPPPPP PPAAVSPTPT NPLASPQPNS GDFAADSSEL GSGAAGDEPR TLKRPRLVWT 120 PQLHKRFVDA VAHLGIKNAV PKTIMQLMNV DGLTRENVAS HLQKYRLYLK RMQGLSSGGG 180 GNGTGGGGGL TGGTDAATDH LFASSPVPAH FLHPGRPNSD HFLPFVPVAA LQNHHHQHQM 240 AAMGHPQLPS QYHRQMGHFG SPTNGQFEHP FLPRQTQQPV HRMGAPVPNT VPGYVEDLES 300 VNGNGGRKVL TLFPTGDD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 9e-33 | 114 | 170 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.006G034900.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC213414 | 0.0 | AC213414.1 Populus trichocarpa clone POP015-I11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460441.1 | 0.0 | transcription factor MYBC1 | ||||
Swissprot | O22210 | 9e-62 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | B9H8R8 | 0.0 | B9H8R8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s03340.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 | Representative plant | OGRP1157 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10760.1 | 4e-91 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.006G034900.1 |
Entrez Gene | 7495685 |
Publications ? help Back to Top | |||
---|---|---|---|
|