PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G031100.1 | ||||||||
Common Name | POPTR_0006s02960g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 174aa MW: 18992.4 Da PI: 10.4695 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ Fs++ L H++ H Potri.006G031100.1 40 FRCKYCKNKFSTSQALGGHQNAH 62 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.56E-6 | 36 | 68 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-4 | 36 | 66 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.198 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.7E-6 | 40 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MSSLERNRAS ENMDNNGSNN LDLNLMDFFE VKSNGGKRMF RCKYCKNKFS TSQALGGHQN 60 AHKRERAIEK RDNGGAMHYP SLGKTLGVDM SSMIHKPAYN HWFRGGGIAN GGHYSGLSRA 120 SIMNHHPRLQ QLQNGGLQSL ASMVPNAVNL GGSTSTSLKQ KEEGKGLELS LKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G031100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216763 | 0.0 | AC216763.1 Populus trichocarpa clone POP006-F11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307946.2 | 1e-125 | zinc finger protein 3 | ||||
TrEMBL | A0A2K1ZVZ8 | 1e-124 | A0A2K1ZVZ8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s02960.1 | 1e-124 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17475 | 4 | 7 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 2e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G031100.1 |
Entrez Gene | 7495670 |