PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.006G020700.1 | ||||||||
Common Name | POPTR_0006s02150g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 847aa MW: 96918 Da PI: 7.4086 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.9 | 6e-27 | 87 | 189 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e+ +r+ ++t+Cka+++vk+++dgkw+++ Potri.006G020700.1 87 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprsrqtkqdPENGTGRRSCSKTDCKASMHVKRRSDGKWVIH 177 5*******************************************999999998776555444555999*********************** PP FAR1 80 kleleHnHelap 91 ++++eHnHel p Potri.006G020700.1 178 SFVKEHNHELLP 189 *********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.8E-25 | 87 | 189 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-31 | 287 | 379 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.396 | 567 | 603 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.4E-7 | 578 | 605 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 7.2E-5 | 579 | 602 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MDIDLRLPSG DHDKEGEEPN DVNNMLSEVK LHNGDVEIGN VVDVAEQVLS IEGGDVNSPT 60 TSMGFKEDIK LEPLSGMEFE SHGAAYSFYQ EYARSMGFNT AIQNSRRSKT SREFIDAKFA 120 CSRYGTKREY DKSFNRPRSR QTKQDPENGT GRRSCSKTDC KASMHVKRRS DGKWVIHSFV 180 KEHNHELLPA QAVSEQTRKM YAAMARQFAE YKNVVGLKND PKNPFDKGRN LGLEAGETKI 240 LLDFFTQMQN MNSNFFYAVD LGEDQRLKNL FWADAKSRHD YSNFSDVVNF DTTYVRNKYK 300 MPLALFVGVN QHYQFMLLGC TLLSDESAAT YSWLMQTWLR AMGGQAPKVI ITDQDKAMKQ 360 VISDVFPNAH HCFCLWNILG KVSENLGNVI KQNGNFMAKF DKCIFRSWTE NEFGKRWWKI 420 LDRFELRENE WMQSLYEDRE QWVPIYMRGA FLAGMSTVLR SESINSYFDK YVHKKTTVQE 480 FVRQYGSILQ DRYEEEAKAD SDTWNKQPTL KSPSPLEKSV SGMYTHAVFK KFQVEVLGVV 540 ACHPKMESQD ETSISFRVQD LEKEQDFTVL WNQTGLEVSC ICRLYEYKGY LCRHALVVLQ 600 MCQQSAIPSQ YILKRWTKDA KSRHLLGEEC EQVQSRVQRY NDLCQRALKL SEEASLSQES 660 YNMAFRALEE AFGNCISMNN SNKNLVEAGT SATHGLLCIE DDNQNRSVTK TNKKKNQTKK 720 RKVNSEQVIT TVGPQDSLQQ MDKLSSRAVA LEGYYGTQQG VPGMVQLNLM APTRDNYYSN 780 QQTIQGLGQL NSIAPSHDGY YGTQQSMHGL GQMDFFRTPA GFSYGIRQDD PNVRTAQLHD 840 DGSRHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00078 | ChIP-seq | Transfer from AT3G22170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.006G020700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459456.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Refseq | XP_024459457.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Refseq | XP_024459458.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Refseq | XP_024459459.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Refseq | XP_024459460.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | B9HD60 | 0.0 | B9HD60_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s02150.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 | Representative plant | OGRP10576 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.006G020700.1 |
Entrez Gene | 7479602 |