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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.006G016200.1 |
| Common Name | POPTR_0006s01720g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
GRAS |
| Protein Properties |
Length: 547aa MW: 61198.1 Da PI: 5.443 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.006G016200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 404.8 | 8.7e-124 | 176 | 546 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l+++Ll+cA+avs+ d ++ l+ l +++s +g+p+qRl ay++e+L+arl s+s++y+al++++ ss+ ++++ ++++++P+
Potri.006G016200.1 176 LKHVLLACADAVSNADIQRSAGLMHVLDQMVSVSGEPIQRLGAYMLEGLRARLELSGSKIYRALKCEAPI---SSDLMTYMGILYQICPYW 263
689******************************************************************9...9999999*********** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
kf++ aN I eave e r+HiiDf+i qG QW+ L+q La+Rp+gpp + iTgv++++s + l +g+rL+k+Ae+++vpfef+
Potri.006G016200.1 264 KFAYTSANVVIREAVEYEPRIHIIDFQIAQGSQWILLMQMLACRPGGPPAIHITGVDDSQSAdaRGGGLDIVGQRLSKVAESCNVPFEFHD 354
**********************************************************9998888999*********************** PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
va + +++le+Lrv+pgEa++Vn+ + lh+++desv++ ++rd+++++vkslsP++v+++eqe+++n+++F+ rf+e+l+yy+a+f+s+
Potri.006G016200.1 355 -VAMDGCEVQLEHLRVQPGEAVVVNFPYVLHHMPDESVNTWNHRDRLIRMVKSLSPRIVTLIEQESNTNTKPFFPRFIETLDYYAAMFESI 444
.6888999*********************************************************************************** PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
+a+ + + ++ri+ E+++++r+ivn++ace+aer+erhe l+kWr+r+++aGF+++pl+++a++ +k ll++++ d y+v+e++ +l+l W
Potri.006G016200.1 445 AAGSSMDFKQRINAEQQCVARDIVNMIACEEAERVERHELLAKWRSRFTMAGFNQYPLGSSATTAVKDLLKEYHRD-YSVQERDWALYLRW 534
**999999******************************************************************66.************** PP
GRAS 363 kdrpLvsvSaWr 374
+dr + + SaWr
Potri.006G016200.1 535 RDRDMATSSAWR 546
***********8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 547 aa
Download sequence Send
to blast |
MQTSQKHRSA GIHGFYHQPV QEIDPYGLSH IQILDKTLYS DAGSQGTSVS FETCLGQFFT 60
LESSSATAGF VVYDSPAASI SSNRSPFSSQ GSHSCISDPR HSPENMYGSP LSGSSSADDG 120
NILRQKLREL EISLLGPESD ITDSGSFCFV SGGYQAEPYA SWDWNQMMEM IPRLDLKHVL 180
LACADAVSNA DIQRSAGLMH VLDQMVSVSG EPIQRLGAYM LEGLRARLEL SGSKIYRALK 240
CEAPISSDLM TYMGILYQIC PYWKFAYTSA NVVIREAVEY EPRIHIIDFQ IAQGSQWILL 300
MQMLACRPGG PPAIHITGVD DSQSADARGG GLDIVGQRLS KVAESCNVPF EFHDVAMDGC 360
EVQLEHLRVQ PGEAVVVNFP YVLHHMPDES VNTWNHRDRL IRMVKSLSPR IVTLIEQESN 420
TNTKPFFPRF IETLDYYAAM FESIAAGSSM DFKQRINAEQ QCVARDIVNM IACEEAERVE 480
RHELLAKWRS RFTMAGFNQY PLGSSATTAV KDLLKEYHRD YSVQERDWAL YLRWRDRDMA 540
TSSAWR*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
