PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G238300.2
Common NamePOPTR_0005s25950g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 381aa    MW: 41400.9 Da    PI: 9.6099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G238300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002170191323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         C  Cg++F+  ++L+ H+++ H
  Potri.005G238300.2 170 CAQCGEVFPKIESLELHQKVrH 191
                         9******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.411168196IPR007087Zinc finger, C2H2
PROSITE patternPS000280170191IPR007087Zinc finger, C2H2
SuperFamilySSF563997.48E-17193356No hitNo description
Gene3DG3DSA:3.90.228.102.5E-7195374IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAALTFSQEQ KETQEKQPSR RRRKLQKQKE KQPSSWDQIK NLLTCKQIEG SRVHDPSKNP  60
IGYPKFGSSC SSICSFKAVV HGNTRVVHRA DNSPESSTVG QETGLLSRKD VCTGSSSTRS  120
LAGPGRSNGG VTHSSSSRGM QFRKLSGCYE CHMIVDPSRY PSARTTISAC AQCGEVFPKI  180
ESLELHQKVR HAVSELGPED SGRNIVEIIF KSSWVRKDNP CCKIERILKV NNTQRTIQRF  240
EDCRDAVKAR ALSSTRKNPR CAADGNELLR FHCTTLTCSL GSRGSSTLCG SIPGCGICTI  300
IRHGFQGKEC KGVRTTASSG RAHDSLLGCT DERRAMLVCR VIAGRVKRVA EDAPPPEEDG  360
ASSAAAGSYD SVAGLQPQIK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.119360.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G238300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2769651e-142GU276965.1 Populus balsamifera isolate LOV02 haplotype B C2H2 type zinc finger family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456286.10.0uncharacterized protein LOC7493961
TrEMBLA0A2K2ALL90.0A0A2K2ALL9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s25950.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-154C2H2-like zinc finger protein