PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.005G238300.1 | ||||||||
Common Name | POPTR_0005s25950g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 407aa MW: 44295.2 Da PI: 9.2298 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 170 | 191 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C Cg++F+ ++L+ H+++ H Potri.005G238300.1 170 CAQCGEVFPKIESLELHQKVrH 191 9******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.411 | 168 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 170 | 191 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 4.51E-24 | 193 | 402 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 2.5E-11 | 195 | 402 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 407 aa Download sequence Send to blast |
MAALTFSQEQ KETQEKQPSR RRRKLQKQKE KQPSSWDQIK NLLTCKQIEG SRVHDPSKNP 60 IGYPKFGSSC SSICSFKAVV HGNTRVVHRA DNSPESSTVG QETGLLSRKD VCTGSSSTRS 120 LAGPGRSNGG VTHSSSSRGM QFRKLSGCYE CHMIVDPSRY PSARTTISAC AQCGEVFPKI 180 ESLELHQKVR HAVSELGPED SGRNIVEIIF KSSWVRKDNP CCKIERILKV NNTQRTIQRF 240 EDCRDAVKAR ALSSTRKNPR CAADGNELLR FHCTTLTCSL GSRGSSTLCG SIPGCGICTI 300 IRHGFQGKEC KGVRTTASSG RAHDSLLGCT DERRAMLVCR VIAGRVKRVA EDAPPPEEDG 360 ASSAAAGSYD SVAGYAGIYS NLEELSVFNP RAILPCFVVI YKALES* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.11936 | 0.0 | bud |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.005G238300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GU276965 | 1e-170 | GU276965.1 Populus balsamifera isolate LOV02 haplotype B C2H2 type zinc finger family protein gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456286.1 | 0.0 | uncharacterized protein LOC7493961 | ||||
TrEMBL | A0A2K2ALL9 | 0.0 | A0A2K2ALL9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s25950.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10341 | 30 | 37 | Representative plant | OGRP661 | 14 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-169 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.005G238300.1 |
Entrez Gene | 7493961 |