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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.005G235900.5 |
| Common Name | POPTR_0005s25720g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 336aa MW: 37209.8 Da PI: 9.9536 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G235900.5 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 387.2 | 2.5e-118 | 1 | 335 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79
mdd +re r+k+ +y+ p++s+k q+m+++aerda+i+ern+alsekkaavaerdmaflqrd+a+aern+al+erdn
Potri.005G235900.5 1 MDDGVHREngRHKAdQYKtaqgqwlmqPQPSMK-----QIMAIMAERDAAIHERNMALSEKKAAVAERDMAFLQRDSAIAERNNALLERDN 86
8998888889***99999766666554445555.....***************************************************** PP
GAGA_bind 80 kllalllvensla....salpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak 165
++++l+++ens a s++p+g++ ++g+k++++ qq+ + p++++ a+++re+++++a pi+ a+ea + ++ k +pk ++++
Potri.005G235900.5 87 AIATLQYRENSFAsantSSSPPGYHNSRGVKHMHHQQQHIHlPHMNEGAYGTREMQTSDAVPISPVASEAAKPRRGK------RPKDTQST 171
**********9988888999******************7667********************987665555544333......33333333 PP
GAGA_bind 166 kkkkksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnG 228
+kk++ks kvk+es+d + sk+++k +dl+ln+v++De+t+P+PvCsCtG rqCYkWGnG
Potri.005G235900.5 172 PSNKKTSKSPMKVKRESEDLNnmfgksnewkngedmngggdglnkqlaaSKSDWKGQDLGLNQVAFDETTMPAPVCSCTGFFRQCYKWGNG 262
3333333333334444433222444455567799********************************************************* PP
GAGA_bind 229 GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
GWqS+CCtt++S+yPLP+++++r+aR++grKmS++af+klL++LaaeG dlsnpvDLkdhWAkHGtn+++ti+
Potri.005G235900.5 263 GWQSSCCTTALSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 335
************************************************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MDDGVHRENG RHKADQYKTA QGQWLMQPQP SMKQIMAIMA ERDAAIHERN MALSEKKAAV 60
AERDMAFLQR DSAIAERNNA LLERDNAIAT LQYRENSFAS ANTSSSPPGY HNSRGVKHMH 120
HQQQHIHLPH MNEGAYGTRE MQTSDAVPIS PVASEAAKPR RGKRPKDTQS TPSNKKTSKS 180
PMKVKRESED LNNMFGKSNE WKNGEDMNGG GDGLNKQLAA SKSDWKGQDL GLNQVAFDET 240
TMPAPVCSCT GFFRQCYKWG NGGWQSSCCT TALSMYPLPA VPNKRHARVG GRKMSGSAFS 300
KLLSRLAAEG QDLSNPVDLK DHWAKHGTNR YITIK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982263 | 0.0 | FJ982263.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
