PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G233300.1
Common NameDREB5, POPTR_0005s25470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 245aa    MW: 26966.3 Da    PI: 5.7683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G233300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-194392255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  Potri.005G233300.1 43 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAATAYDAAARKLYG 92
                        69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.38E-2242102No hitNo description
PROSITE profilePS5103222.40543100IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2143100IPR016177DNA-binding domain
PfamPF008471.3E-134392IPR001471AP2/ERF domain
SMARTSM003801.9E-3643106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3043101IPR001471AP2/ERF domain
PRINTSPR003671.0E-94455IPR001471AP2/ERF domain
PRINTSPR003671.0E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGGMSKSTTS GFGEKKQFKK PAQASSRKGC MRGKGGPENA LCTYKGVRQR TWGKWVAEIR  60
EPNRGARLWL GTFDTSHEAA TAYDAAARKL YGPEAKLNLP ELQVNNCQFP ASPANSQVTQ  120
MTYQPCQIIH NCSSTTSTCS SNTPSIESIE MTPMLYNHDP IMYFSNESVD SDGKGAVNEV  180
NFGRSEVEIK EFWSNFNVNI PFDDSIWVEA AMSINFPVVE DPGIFASNLM EGTGRDTLQT  240
PWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1844100360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-1844106668ATERF1
3gcc_A8e-1844106668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G233300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559610.0EF155961.1 Populus trichocarpa putative DRE-binding protein 5 (DREB5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306897.20.0dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ21e-51DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA9XBG60.0A9XBG6_POPTR; Putative DRE-binding protein 5
STRINGPOPTR_0005s25470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]