PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G230800.2
Common NamePOPTR_0005s25240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 336aa    MW: 36324.6 Da    PI: 6.7815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G230800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-052442821255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Potri.005G230800.2 244 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 282
                         7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.363232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-5242286No hitNo description
SuperFamilySSF474596.02E-10242288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-9246288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MFQDLGFHYW NNNAGNFSSH SAYDLQLSKI KEGLSSSDSF PKFTEMLNSP SSTIEDPHVS  60
SSSYIKDELK DLSLSEKLLL ETISSGFPIN GHDQFSPRQI SSSHHNCSSF GSAIPSRGSF  120
SQIYPSINIS NLNQPSSPLI SGSFDMNLQA LDLLTSTRFS GSFPQPASLD PLDMFKDSLS  180
FGLDSIQQSN QRPSCSPSKI SSTNEITEAK RPNNSMMEPK ATQAAAPKKS RLESRSPCPP  240
FKVRKEKLGD RIAALQQLVA PFGKTDTASV LMEAIGYIKF LQNQVEASNS GGDQESKRDL  300
RSRGLCLVPL SCMSYVTTDG GGGGIWPPPN FGGGT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.135581e-175stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G230800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456318.10.0transcription factor bHLH110 isoform X2
SwissprotQ9SFZ31e-67BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A3N7EZW10.0A0A3N7EZW1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s25240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]