PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G230800.1
Common NamePOPTR_0005s25240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 383aa    MW: 41858.5 Da    PI: 7.6875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G230800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.2e-053193571255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Potri.005G230800.1 319 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 357
                         7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.363307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-11317369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-5317361No hitNo description
Gene3DG3DSA:4.10.280.103.5E-9321364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MESANLHHQH QLQDQFVGSS SLTTATPSSY AEAGSARAWT QTITLNSDNS NPSYNGVIFN  60
QRQKNESPIS SLNSTMFQDL GFHYWNNNAG NFSSHSAYDL QLSKIKEGLS SSDSFPKFTE  120
MLNSPSSTIE DPHVSSSSYI KDELKDLSLS EKLLLETISS GFPINGHDQF SPRQISSSHH  180
NCSSFGSAIP SRGSFSQIYP SINISNLNQP SSPLISGSFD MNLQALDLLT STRFSGSFPQ  240
PASLDPLDMF KDSLSFGLDS IQQSNQRPSC SPSKISSTNE ITEAKRPNNS MMEPKATQAA  300
APKKSRLESR SPCPPFKVRK EKLGDRIAAL QQLVAPFGKT DTASVLMEAI GYIKFLQNQV  360
ETLSVPYMKS SRNKTSRSIQ AV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.135580.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G230800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383714.10.0transcription factor bHLH110 isoform X1
TrEMBLA0A3N7F5W20.0A0A3N7F5W2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s25240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Representative plantOGRP1021979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-60bHLH family protein