PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G228000.1
Common NamePOPTR_0005s24960g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 85aa    MW: 9343.34 Da    PI: 7.6687
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G228000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.2e-091356344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+   +l+ +a + + ++   +W  +a+ +g g++++++k ++
  Potri.005G228000.1 13 SWTPKQNKLFEKALAVYDKDtpdRWQNVAKAVG-GKSAEEVKMHY 56
                        7********************************.*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.597660IPR017877Myb-like domain
SMARTSM007176.7E-81062IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-41259IPR009057Homeodomain-like
SuperFamilySSF466894.64E-131268IPR009057Homeodomain-like
PfamPF002495.0E-71356IPR001005SANT/Myb domain
CDDcd001674.36E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MAYFTSSHGS SSSWTPKQNK LFEKALAVYD KDTPDRWQNV AKAVGGKSAE EVKMHYDRLV  60
EDLTYIESGQ APLPNYKPSG SNST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-33482179RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G228000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004014.18e-50PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLB9H8R05e-56B9H8R0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24960.18e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-36RAD-like 6