PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G225800.1 | ||||||||
Common Name | POPTR_0005s24750g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 32677.8 Da PI: 6.0388 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.8 | 1.3e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF P+deelv++yL kk++++++ ++ evd++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat++gyWkatgkd++ Potri.005G225800.1 10 LPPGFRFYPSDEELVCHYLYKKITNEQVLK-GTLVEVDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTTGYWKATGKDRT 99 79************************9655.78***************88888999*********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 vl+ ++e+vg++ktLvfy++rap+g kt W+mhe+rle Potri.005G225800.1 100 VLDPtTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 ***977888***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.55 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KITNEQVLKG TLVEVDLHTC EPWQLPEVAK 60 LNATEWYFFS FRDRKYATGF RTNRATTTGY WKATGKDRTV LDPTTREVVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMHPKEDWVL CRVFHKCKAE DYNAKFSPQL MFETTTSSGT 180 VNLAASPLST DHQTLPCGYQ QMTSLSSNPP HQNQDQSSLL NLLQLSQDRN ANPNISTDIS 240 SKAVDDYAFL WDDMNLEETS LGDGVLASNL EDMRFEIDHN SMVFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-47 | 9 | 156 | 14 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G225800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307652.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-62 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | B9H8N9 | 0.0 | B9H8N9_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_033050m | 1e-158 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-91 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G225800.1 |
Entrez Gene | 7476926 |