PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G223300.1
Common NamePOPTR_0005s24470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 242aa    MW: 26800.7 Da    PI: 5.0918
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G223300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-18107156355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr ++ +g+++AeIrd + ng   r++lg+f+t e Aa a+++a+++l+g
  Potri.005G223300.1 107 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTGETAALAYDQAALSLHG 156
                         9*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-35106170IPR001471AP2/ERF domain
PROSITE profilePS5103222.919106164IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-22106165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-29106165IPR001471AP2/ERF domain
PRINTSPR003673.3E-10107118IPR001471AP2/ERF domain
PfamPF008471.1E-12107156IPR001471AP2/ERF domain
CDDcd000181.21E-27107165No hitNo description
PRINTSPR003673.3E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDHSFFNHPN LEFSPSSPSS SLDLLQDDLL FNPHDNFYLF NSNDSEETLP SDVPFTEAKE  60
SATSVTSDVP PNNKAKDLSE LISSNEIKEK EAAPNATEEN PGREKTYRGV RKRPWGKYAA  120
EIRDSTRNGV RVWLGTFDTG ETAALAYDQA ALSLHGSKAV LNFPIEKVRK SLREMKSGLE  180
DQYWCSPAEA LKKTHSKRRA VSREGKGKGN GLATKEVVVF EDLGAEYLEE LLSSCERGTP  240
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-26105166465ATERF1
3gcc_A3e-26105166465ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G223300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306843.11e-179ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y92e-54ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLB9H8L21e-177B9H8L2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24470.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1713338
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-51ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]