PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G223100.1
Common NamePOPTR_0005s24450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 144aa    MW: 16168.7 Da    PI: 7.0918
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G223100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-192272356
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        y+G+r+++ +g+++AeIrdp++ng  +r +lg+++taeeAa+a+++a+ +++g+
  Potri.005G223100.1 22 YRGIRRRP-WGKFAAEIRDPTKNG--ARRWLGTYDTAEEAARAYDRAAFAFRGH 72
                        9*******.***********9998..*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-302181IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-232180IPR016177DNA-binding domain
SMARTSM003804.3E-362185IPR001471AP2/ERF domain
PROSITE profilePS5103224.5132179IPR001471AP2/ERF domain
PRINTSPR003671.4E-102233IPR001471AP2/ERF domain
CDDcd000189.83E-302280No hitNo description
PfamPF008474.0E-132272IPR001471AP2/ERF domain
PRINTSPR003671.4E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
METHQGEKNT KKQEKGRGEN AYRGIRRRPW GKFAAEIRDP TKNGARRWLG TYDTAEEAAR  60
AYDRAAFAFR GHLAILNFPN EYQHQDPSSA MSFASSSSFS TANPVNYGHE VSSTGGQEVI  120
EFEYLDNKLL EELLGTNDPS RQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-29161295114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11028KKQEKGRGENAYRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G223100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307640.11e-104ethylene-responsive transcription factor ERF098
SwissprotQ9LTC51e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB9H8L01e-102B9H8L0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24450.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.19e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]