PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G219600.1
Common NamePOPTR_0005s24110g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 176aa    MW: 19301.1 Da    PI: 10.0494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G219600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-202978255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrd ++    +kr +lg+f+taeeAa a+++a+++l+g
  Potri.005G219600.1 29 HFRGVRKRP-WGRFAAEIRDpWK----KKRSWLGTFDTAEEAALAYDEAARSLRG 78
                        69*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-302886IPR001471AP2/ERF domain
PROSITE profilePS5103221.722986IPR001471AP2/ERF domain
CDDcd000187.86E-302985No hitNo description
PfamPF008473.0E-132978IPR001471AP2/ERF domain
SMARTSM003802.3E-332992IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-222986IPR016177DNA-binding domain
PRINTSPR003677.7E-103041IPR001471AP2/ERF domain
PRINTSPR003677.7E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MIVTTTLSLA GSSSPSSPAV QAKNEPQRHF RGVRKRPWGR FAAEIRDPWK KKRSWLGTFD  60
TAEEAALAYD EAARSLRGPK ARTNFFHNDH FAPVPFSQTA VVGAGVFEKC CSPVCLAGEV  120
ARMTMPAASP VRSEYTGYNM ETVNENVGLV LNEEKKLRGG KKPFLFDLNL PAPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-202885462ATERF1
3gcc_A3e-202885462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13352RKRPWGRFAAEIRDPWKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G219600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307631.11e-128ethylene-responsive transcription factor 9
TrEMBLB9H8I31e-127B9H8I3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24110.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-21ethylene responsive element binding factor 3