PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G219500.1
Common NamePOPTR_0005s24100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 348aa    MW: 38556.8 Da    PI: 10.1151
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G219500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.1e-32281338359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  Potri.005G219500.1 281 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 338
                         99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.9E-17232277IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.5E-34267339IPR003657WRKY domain
PROSITE profilePS5081130.641274340IPR003657WRKY domain
SuperFamilySSF1182901.15E-27277339IPR003657WRKY domain
SMARTSM007742.9E-39279339IPR003657WRKY domain
PfamPF031061.1E-27281338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEGVEEANRA AVESCHRVIS LLSQPQDQVQ YRNLMVETGE AVFRFKKVVS LLNTGLGHAR  60
VRKLKKLPTP LSQSILLDNP LSSTDHPSKT PQFLQSSSYL ESQPIQELGS IAKNCLSLGT  120
PSLELSSNGK NPLQLGQPTP AAHYQFLQQQ QLHRLQLQQQ QQMKQQAEMM FRKSNSGISL  180
NFDSSSCTPT MSSTRSFISS LSIDGNVANL EGSAFHLTGA ARSSDQSSQQ HKRKCSGRGE  240
DGSMKCGSSV RCHCSKKRKH RVKRSIKVPA ISNKLADIPP DDYSWRKYGQ KPIKGSPHPR  300
GYYKCSSMRG CPARKHVERC LEDPSMLIVT YEGEHNHPRI PAQSTNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-212753421076WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.147900.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G219500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0297790.0CT029779.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306823.10.0probable WRKY transcription factor 21
RefseqXP_024457974.10.0probable WRKY transcription factor 21
SwissprotO043361e-129WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLB9H8I20.0B9H8I2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-121WRKY DNA-binding protein 21