PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G215100.1
Common NamePOPTR_0005s23660g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 475aa    MW: 51942.2 Da    PI: 9.1904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G215100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0580102123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Potri.005G215100.1  80 FVCEICNKGFQRDQNLQLHRRGH 102
                         89*******************88 PP
2zf-C2H212.30.00053156178123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Potri.005G215100.1 156 WKCEKCSKIYAVQSDWKAHSKTC 178
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.23E-679102No hitNo description
Gene3DG3DSA:3.30.160.601.5E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.5E-580102IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01780102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94980102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355260121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.23E-6151176No hitNo description
SMARTSM00355170156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MFPAAMSNST SLSEEASVSS GTRVQEFGSL NPLASNFSPL QHQQQQQKII KKKRSLPGNP  60
DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNSKEIKKKA  120
YVCPEPTCVH HHPSRALGDL TGIKKHYCRK HGEKKWKCEK CSKIYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSRKDSFVTH RAFCDALAEE SARLSAHQLI STDPNAQALL LQNALQAHPI  240
SLFSAPNPTH QQQISLASPW DPPRHHNPSS NNHQNPVHIK PETHNHFQIP PLLQEPPPPA  300
LPSHKGLLAS TFHSLSNAVT SSAASHHLSA TALLQKAASV GAAQTSVGHS QMTQLDMGEL  360
GSAGQVHVNS ASHVAQGPNY NLNSLATWQK SDRLTRDFLG LTGECEDHHG HAASNSNGSS  420
GGVNASMNVR EILTYTGGVG FHQQQYNERD HSLLKPHGGF GFAQPSASKT WGDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36152216367Zinc finger protein JACKDAW
5b3h_F2e-36152216367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G215100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-143AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306797.20.0protein indeterminate-domain 12
SwissprotO227591e-130IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLB9H8D50.0B9H8D5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s23660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]