PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G208600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 694aa    MW: 77990.3 Da    PI: 5.8598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G208600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.1e-14473519455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Potri.005G208600.1 473 NHVLAERRRREKLNERFIMLRSLVPFV-----TKMDKASILGDTIEYVKQLR 519
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-569191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.561469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-19471538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-20473536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-15473523No hitNo description
PfamPF000102.0E-11473518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-18475524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MATPPSSRLQ TMLQAAVQSV QWTYSLFWQM CPQQGILVWG DGYYNGPIKT RKTVQPMEVT  60
TEEASLQRSQ QLRELYDSLS IGETNQPARR PCAALSPEDL TETEWFYLMC VSFSFPPGGG  120
LPGKAYARRR HVWLTGANEI DSKTFSRAIL AKSARVQTVV CIPLLDGVVE FGTTDKVQED  180
LGLIQHVKTF FSDHHHRHLT PPKPALSEHS TSSPATSSHD HPRFHPPPIP PFYVAAEPSA  240
NAEQIDEDEE EDEEEEEHDS DSEAETSRDD HLEPRQAQNP HQVVAAEPSE LMQLEMSEDI  300
RLGSPDDGSN NLDSDFPLTG PDNSMDHRSR ADSYKAESAR RWTMLQDNPF SGNLQPSASG  360
PPPLEDLAQE DTHYSQTIST ILQSQPVWLA AEPSSIAYEA RYHQSAFSRW TNRSDHLFHV  420
SVETTSQWLL KYILFSVPHL HSKSREDNSP KSRDGEAASR FRKGTPQDEL SANHVLAERR  480
RREKLNERFI MLRSLVPFVT KMDKASILGD TIEYVKQLRQ KIQDLETRNK QMESEQRPRS  540
VDRPQRTSTS DSLKKQKSGV TVVDRARSLG PLPDKRKMRV VEDSAGGGAK PKTVGALPQP  600
EPVVHKELET SVEVSIIESD ALLELECGFR EGLLLDIMQM LRELRIETIA VQSSLNNGIF  660
AGELRAKVKE NVNGKKVSIV EVKRAIHKII PHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2291929193Transcription factor MYC3
4rqw_B2e-2291929193Transcription factor MYC3
4rs9_A2e-2291929193Transcription factor MYC3
4yz6_A2e-2291929193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1477482ERRRRE
2478483RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G208600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9097570.0KJ909757.1 Populus tremula x Populus tremuloides clone INRA 353-38 basic helix-loop-helix transcription factor (bHLH131) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383662.20.0basic helix-loop-helix protein A
RefseqXP_024457395.10.0basic helix-loop-helix protein A
RefseqXP_024457396.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2K2AJW00.0A0A2K2AJW0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-94bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]