PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G207700.2
Common NamePOPTR_0005s22930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 843aa    MW: 93050.4 Da    PI: 6.5091
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G207700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23132233199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Potri.005G207700.2 132 FCKTLTASDTSTHGGFSVPRRAAEKVfptldysQTPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 219
                         99****************************97544444..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Potri.005G207700.2 220 -WNEKNQLLLGIRRA 233
                         .8899999****997 PP
2Auxin_resp119.23.2e-39258341183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv+++ k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Potri.005G207700.2 258 AAHAAATNSRFTIFYNPRASPSEFVIPLVKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 341
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-48117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-41124247IPR015300DNA-binding pseudobarrel domain
CDDcd100172.56E-21131232No hitNo description
PROSITE profilePS5086312.52132234IPR003340B3 DNA binding domain
SMARTSM010198.6E-24132234IPR003340B3 DNA binding domain
PfamPF023627.6E-22132233IPR003340B3 DNA binding domain
PfamPF065073.5E-34258341IPR010525Auxin response factor
PROSITE profilePS5174521.636774842IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MRLSSSSSST GFNQQTPEGD KKCLNSELWH ACAGPLVSLP HVGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPSLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSQDD QKDAYLLPAE  120
LGTASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPT LDYSQTPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTFM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLVKYIK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSAFPMRLKR PWPSGLPSFH GLQDGDLNIN SPMMWLQGGV GDLGVQSLNF  420
QSFGVAPWIQ PRFDTSMPAL QPEMYQTMAA AALQEMRTVE SSKLASQSHL QFQQSQNVSN  480
GPAALIQRQM LQQSNLQHAL LQNFQENQAS TQAQFLQQHL QHRNQYTGQQ LQQHQPQLQQ  540
VQQPKQLNEL SAPQQIPNVI SALPHLTSVA PSQSPSLQPI SSQCQQQAFS EPLGNSIAAS  600
DVSSMHSVIG SLSQDGGSHL LNSNGSNPVI SPALLSKRAA IDPQLSSGAA HCALPQVEQL  660
RTTQSTVSDL ATLLAPFSGR EYSTYQGAND PQNNLLFGVN IDSSTFMLQH GIPNLRNIGT  720
ENDPLSMPFA ASTFTSATGS DIPLNSDMTA SSCVDESGFL QSSENVDQVN PSTRTFVKVH  780
KSGSYGRSLD ISKFSSYDEL RSELARLFCL EGLLEDPQRS GWQLVFGDRE NDVLLLGDDP  840
WQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1632136248388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.93940.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G207700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471320.0EF147132.1 Populus trichocarpa clone WS01228_B04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307574.20.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLB9H8680.0B9H868_POPTR; Auxin response factor
STRINGPOPTR_0002s05590.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]