PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G207200.6
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 463aa    MW: 50473.2 Da    PI: 9.1142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G207200.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.68e-17272318455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Potri.005G207200.6 272 VHNLSERRRRDRINEKMRALQELIPHC-----YKTDKASMLDEAIEYLKSLQ 318
                         6*************************9.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-20266328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-18271322No hitNo description
PfamPF000103.9E-14272318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-20272326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-18274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MMTLCLGFNT LLKILLKRSS VPIFSRNCLH HFLIKFWKES RLHLMPPHLH SNSISISISD  60
NSTTINLMWF LNFQEIQCPG NPMPPPRIQV PEKNHAGVGG FGEAVNANFS QFSAPFKGGD  120
FRTSSGQFGG QGSGNSPQGE VRECSVVTVG SSNQIPHDRD MSRASSNAMG TSTAFSTGPS  180
MDDPRKIVSQ SERGKTETLE ATLTTSSGGS GSSFGRTCKQ SAGPSSSQKR KTIDTEDSEF  240
QSEAAELDLD SMAGNNPTKR SGSTRRSRAA EVHNLSERRR RDRINEKMRA LQELIPHCYK  300
TDKASMLDEA IEYLKSLQLQ LQVMWMGGGM APMLFPGVQH FMSRMGMGPP LPSMQNPMHL  360
PRVQLIDQSI SMAPTQNSGV MCQAPVLNPV NFHNQMQNPA FADQYARFMG FHMQAASQPM  420
NMFRFGSQTV QQNQMMAPTS SVGGPLSAGT AVSDAPPSDK VG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G207200.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456482.10.0LOW QUALITY PROTEIN: transcription factor PIF4
TrEMBLA0A2K2AJV70.0A0A2K2AJV7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s22870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-51phytochrome interacting factor 4