PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G205400.1 | ||||||||
Common Name | POPTR_0005s22710g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 35231.7 Da PI: 6.5205 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.6 | 1.5e-50 | 24 | 150 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPtdeelv +yL++kve+k++ + e ik++diyk++PwdLp +ae+kewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk++ Potri.005G205400.1 24 LPGFRFHPTDEELVGFYLRRKVEKKRIGI-ELIKQIDIYKYDPWDLPI-STAEDKEWYFFCLRGRKYRNSVRPNRVTRSGFWKATGIDKPI 112 69**************************9.89***************4.456899************************************ PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s ++e +glkk Lv+y+g+a kg+ktdW+mhe+rl Potri.005G205400.1 113 YSDkeTHECIGLKKCLVYYRGSAGKGTKTDWMMHEFRL 150 **7544555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-52 | 19 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.095 | 23 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.3E-26 | 25 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MEAMTKMSGC ISSDNYDKDE EVILPGFRFH PTDEELVGFY LRRKVEKKRI GIELIKQIDI 60 YKYDPWDLPI STAEDKEWYF FCLRGRKYRN SVRPNRVTRS GFWKATGIDK PIYSDKETHE 120 CIGLKKCLVY YRGSAGKGTK TDWMMHEFRL PPNGKTTNPL NARNIAQEAE VWTLCRILKR 180 IPSYKKYVAA VPATEQKPIN CDSNSKSCSF ESETSTEQDV SFGDSFVQRN ERKPVTIDQV 240 DHERNNLFMG GQYDSVTEAP FTAAYQGFRN TGIGDDFFVN GNWDDLRTVV ELAIDPAQVP 300 DECRW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-44 | 25 | 186 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-44 | 25 | 186 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-44 | 25 | 186 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-44 | 25 | 186 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-44 | 25 | 186 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-44 | 25 | 186 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-44 | 25 | 186 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-44 | 25 | 186 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-44 | 25 | 186 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-44 | 25 | 186 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-44 | 25 | 186 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-44 | 25 | 186 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-44 | 25 | 186 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-44 | 25 | 186 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G205400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307563.1 | 0.0 | transcription factor JUNGBRUNNEN 1 isoform X1 | ||||
Swissprot | Q9SK55 | 1e-88 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | B9H845 | 0.0 | B9H845_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s22710.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 5e-91 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G205400.1 |
Entrez Gene | 7464813 |