PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G203200.1
Common NamePOPTR_0005s22480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 323aa    MW: 36311.1 Da    PI: 7.6523
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G203200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1062e-33184241259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  Potri.005G203200.1 184 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCMVKKRVERSFQDPSIVITTYEGQHNHH 241
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-34168243IPR003657WRKY domain
SuperFamilySSF1182901.7E-29176243IPR003657WRKY domain
PROSITE profilePS5081132.087178243IPR003657WRKY domain
SMARTSM007741.4E-39183242IPR003657WRKY domain
PfamPF031062.3E-26184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSNEKEDPYH YDPFHYNIQQ GANRPVSVFP FFNDNLSMYN QQAPTQNLQG FSDPSFMSFT  60
DCLHGSMDHY NTLSRALDVS CSSSEVISPV DQDGSRKIGA GESAATNQYT PSTPNSSVSN  120
SSSNDGATEE DPGKSKKHKQ PKESTEDGDI DGDAKKVSKT KKKEKRQKEP RFAFLTKSEI  180
DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCMVKKRV ERSFQDPSIV ITTYEGQHNH  240
HCPATLRGNA AGMLSPSLLA STSIGQSFPQ DFLTRLLPPS NQGDQTSIFY QNHDPQYQHQ  300
LYAPDYGLLQ DLVPSFIHKK QP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-291762441078Probable WRKY transcription factor 4
2lex_A8e-291762441078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G203200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306743.10.0probable WRKY transcription factor 71
TrEMBLB9H8230.0B9H823_POPTR; Uncharacterized protein
STRINGPOPTR_0005s22480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-58WRKY DNA-binding protein 28