PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G186400.1
Common NamePOPTR_0005s20870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 335aa    MW: 37712.7 Da    PI: 9.4736
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G186400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-172065147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg W + Ed++l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  Potri.005G186400.1 20 RGHWRPAEDDKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 65
                        899*****************************.***********996 PP
2Myb_DNA-binding58.91.2e-1872115146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Potri.005G186400.1  72 RRPFSEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 115
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7091566IPR017930Myb domain
SuperFamilySSF466893.37E-2919113IPR009057Homeodomain-like
SMARTSM007172.0E-141968IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-272173IPR009057Homeodomain-like
PfamPF139212.2E-172383No hitNo description
CDDcd001671.59E-132364No hitNo description
PROSITE profilePS5129427.44167121IPR017930Myb domain
SMARTSM007174.9E-1671119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2174119IPR009057Homeodomain-like
CDDcd001671.09E-783114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEESLAGNSS DDAKSTACPR GHWRPAEDDK LRQLVEQYGA QNWNSIAEKL QGRSGKSCRL  60
RWFNQLDPRI NRRPFSEEEE ERLLAAHRIH GNKWALIARL FPGRTDNAVK NHWHVIMARR  120
QREQSKLCGK RSYQDNLSES NATNSSHAGK SRAQDVFNSR IGFDDSRVLE FRNPGKDRIL  180
SISPSGSSPS WNFAPSTIAA SNNSSSVDLS RREGRDNYFN SSLFCTTESS KLISDQPIYR  240
YYTNSSVCGS YRSSSIFGLP NYRRVVPSPF GSYLKLGDDY ENHGMIKKEL ASCHNSSTLN  300
NLRATSNHQE KGDHESIKHK DAPFIDFLGV GISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31201207107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G186400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707900.0AB970790.1 Populus tremula x Populus tremuloides PtxtMYB158 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307474.10.0transcription factor MYB23
TrEMBLB9H7M60.0B9H7M6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s20870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-63myb domain protein 52