PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G182200.1
Common NamePOPTR_0005s20480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24690.3 Da    PI: 7.6637
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G182200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.3e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien snrqvt+skR+ngi+KKA+E+ vLCda+v+++if+s+g+++ey+s
  Potri.005G182200.1  9 KRIENASNRQVTYSKRKNGIIKKAKEITVLCDAQVSLVIFASSGRMHEYCS 59
                        79***********************************************96 PP
2K-box676.4e-2371169199
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         y+k+sgk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL + eL+ +e++L+ +l  + +k++e+  +  ++ ++  +e ++ +
  Potri.005G182200.1  71 YHKQSGKRLWDAKHENLSKEIDRIKKENDSMQIELRHLKGEDISSLHHTELMAIEEALDAGLAAVCKKQMEYHSMLEQNEKMLDEEFKRLQ 161
                         8999*******************************************************************99999999999999999999 PP

               K-box  92 kaLrkkle 99 
                           L+++ +
  Potri.005G182200.1 162 FVLQQQEM 169
                         99999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.889161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-35296IPR002100Transcription factor, MADS-box
CDDcd002652.50E-40280No hitNo description
PRINTSPR004047.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.5E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1482162IPR002487Transcription factor, K-box
PROSITE profilePS5129711.99684170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRGKIEIKR IENASNRQVT YSKRKNGIIK KAKEITVLCD AQVSLVIFAS SGRMHEYCSP  60
STTVVDLLDK YHKQSGKRLW DAKHENLSKE IDRIKKENDS MQIELRHLKG EDISSLHHTE  120
LMAIEEALDA GLAAVCKKQM EYHSMLEQNE KMLDEEFKRL QFVLQQQEMA MGENAMEMEN  180
AYHQQRMRDY NFQVPFAFRV QPIQPNLQER M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-16175173Myocyte-specific enhancer factor 2B
1tqe_Q1e-16175173Myocyte-specific enhancer factor 2B
1tqe_R1e-16175173Myocyte-specific enhancer factor 2B
1tqe_S1e-16175173Myocyte-specific enhancer factor 2B
6byy_A2e-16175173MEF2 CHIMERA
6byy_B2e-16175173MEF2 CHIMERA
6byy_C2e-16175173MEF2 CHIMERA
6byy_D2e-16175173MEF2 CHIMERA
6bz1_A2e-16175173MEF2 CHIMERA
6bz1_B2e-16175173MEF2 CHIMERA
6bz1_C2e-16175173MEF2 CHIMERA
6bz1_D2e-16175173MEF2 CHIMERA
6c9l_A1e-16175173Myocyte-specific enhancer factor 2B
6c9l_B1e-16175173Myocyte-specific enhancer factor 2B
6c9l_C1e-16175173Myocyte-specific enhancer factor 2B
6c9l_D1e-16175173Myocyte-specific enhancer factor 2B
6c9l_E1e-16175173Myocyte-specific enhancer factor 2B
6c9l_F1e-16175173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.124320.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G182200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0291720.0EU029172.1 Populus deltoides MADS box transcription factor (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307460.31e-158floral homeotic protein PMADS 2 isoform X1
SwissprotQ0HA251e-119MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A2K2AIH81e-156A0A2K2AIH8_POPTR; Uncharacterized protein
STRINGPOPTR_0005s20480.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Representative plantOGRP53021222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]