PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G180200.2 | ||||||||
Common Name | POPTR_0005s20240g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25418.7 Da PI: 8.9796 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.7 | 1.8e-30 | 5 | 77 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfF++rd+ky++g+r+nra+ +gyWkatg dk++ + ++ g+kk Lvfy g+apkgekt+W+mheyrl Potri.005G180200.2 5 GEKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPIGQ--PKTAGIKKALVFYAGKAPKGEKTNWIMHEYRL 77 579************************************98..7789**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.996 | 1 | 103 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.36E-35 | 3 | 103 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-15 | 9 | 77 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MALYGEKEWY FFTPRDRKYP NGSRPNRAAG RGYWKATGAD KPIGQPKTAG IKKALVFYAG 60 KAPKGEKTNW IMHEYRLAEV DRSVRKKNSL RLDDWVLCRI HNKKGTIEKQ GQHLSVQKAN 120 SSTEIAEEDE KKSVVMLPPP PGPSSATGTV NDYVYFDTSD SVPRLHTDSS CSEHVVSPEF 180 TCEVQSNPYN YLDATMDIPF ASQFQGNHQM SPLQDMFMYL QKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-49 | 2 | 109 | 64 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.5244 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G180200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU227979 | 0.0 | CU227979.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307447.1 | 1e-169 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-103 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | B9H7H2 | 1e-168 | B9H7H2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s20240.1 | 1e-169 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-102 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G180200.2 |
Entrez Gene | 7460965 |