PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.005G176000.1 | ||||||||
Common Name | POPTR_0005s15830g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 23843.8 Da PI: 5.7934 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.5e-18 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa +l+g Potri.005G176000.1 31 KYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALFCLKG 80 8*****998.**********9...336************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-29 | 30 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-11 | 31 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-34 | 31 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-19 | 31 | 89 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.812 | 31 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.29E-20 | 31 | 90 | No hit | No description |
PRINTS | PR00367 | 1.4E-8 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MVKSEHRIQS EASKPVAISS TPSPSACKKR KYKGVRMRSW GSWVSEIRAP NQKTRIWLGS 60 YSTPEAAARA YDAALFCLKG SAAALNFPIT SSHYIPDTVM SPKSIQRVAA AAANSFVDNP 120 TTPQSSSPPL PCSSSSSSSI SSPPSVVSSP SDIQLDDYIS LMESFETNNE PVSMLDSWYN 180 FDVLQSPKYL DLNWVSFNPP MIDDLYEGDL RLWSFAE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-15 | 28 | 89 | 2 | 64 | ATERF1 |
3gcc_A | 4e-15 | 28 | 89 | 2 | 64 | ATERF1 |
5wx9_A | 6e-15 | 31 | 88 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.005G176000.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF155957 | 1e-180 | EF155957.1 Populus trichocarpa RAP2-like protein (RAP2L16) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307427.1 | 1e-157 | ethylene-responsive transcription factor ERF014 | ||||
Swissprot | Q9SFE4 | 1e-43 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | B9H7D0 | 1e-155 | B9H7D0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s15830.1 | 1e-156 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-42 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.005G176000.1 |
Entrez Gene | 7460943 |
Publications ? help Back to Top | |||
---|---|---|---|
|