PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G169600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 35aa MW: 4047.64 Da PI: 12.2436 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.4 | 1.3e-11 | 11 | 34 | 1 | 24 |
S---SHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKA 24 krie+++ rqvtfskRrng +KKA Potri.005G169600.1 11 KRIESNTDRQVTFSKRRNGFIKKA 34 79*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.301 | 3 | 34 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-11 | 4 | 34 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-11 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-9 | 12 | 34 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-11 | 25 | 34 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 35 aa Download sequence Send to blast |
SRNGRLQLEI KRIESNTDRQ VTFSKRRNGF IKKA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G169600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216411 | 9e-32 | AC216411.1 Populus trichocarpa clone POP034-D16, complete sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 2e-11 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G169600.1 |