PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G168700.1 | ||||||||
Common Name | POPTR_0005s16690g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 300aa MW: 33344.6 Da PI: 7.2347 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.8 | 8.9e-21 | 119 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Potri.005G168700.1 119 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 168 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.06E-34 | 118 | 178 | No hit | No description |
PROSITE profile | PS51032 | 23.143 | 119 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-38 | 119 | 182 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 119 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-23 | 119 | 177 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-14 | 120 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MAATMDLYSS ISLQSDPLVG ELMEALEPFM KNVCCSTSTA YPFSTGFSIN DAMGLQQPSS 60 SIGLNHLTPN QIHQIQTQIH QNNSHSYLRT CQQPQTLKFL SPKPVPMKQM GTPSKSTKLY 120 RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD TAEEAALAYD KAAYKLRGDF ARLNFPNLRH 180 QGSHIGEYKP LHSSVDAKLQ AICESLENSS QQKRGKVEKR SNSTKKETSL VVGTQEEEPV 240 VKSETPSPVL TESDGSGGSS PLSDLTFPDI EEAPLEFDSG NFMLQKYPSY EIDWASILS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 118 | 176 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G168700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307390.3 | 0.0 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-13 | ||||
Swissprot | Q8H1E4 | 3e-92 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A2K2AHT9 | 0.0 | A0A2K2AHT9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s16690.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 9e-65 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G168700.1 |
Entrez Gene | 7468904 |
Publications ? help Back to Top | |||
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