PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G164900.1
Common NamePOPTR_0005s17080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 338aa    MW: 37873.4 Da    PI: 5.8471
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G164900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.9e-191461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lvd+++++G g+W++ ++   ++R++k+c++rw +yl
  Potri.005G164900.1 14 KGPWTPEEDQKLVDYIQKHGHGSWRALPKLADLNRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding52.11.5e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++++E++ +++++   G++ W+tIa +++ gRt++++k++w+++l
  Potri.005G164900.1  67 RGKFSQDEEQTILHLHSIIGNK-WSTIATHLP-GRTDNEIKNFWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.305961IPR017930Myb domain
SuperFamilySSF466891.5E-3111108IPR009057Homeodomain-like
SMARTSM007174.5E-151363IPR001005SANT/Myb domain
PfamPF002492.3E-171461IPR001005SANT/Myb domain
CDDcd001672.55E-121661No hitNo description
PROSITE profilePS5129426.01762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-2765117IPR009057Homeodomain-like
SMARTSM007174.3E-1566114IPR001005SANT/Myb domain
PfamPF002495.7E-1567112IPR001005SANT/Myb domain
CDDcd001675.83E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLVDYIQ KHGHGSWRAL PKLADLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQDEEQTILH LHSIIGNKWS TIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DFFDSLPQLI ALANLRDLME HRPLDEHAMR LQEEAVQLAK LQYLQYLLQS  180
AASIPSTNSY GQNGITDMEV LNLLNSIPLI EENLVLNSSE LENQGSNHFA NATSQLLHHP  240
SVLSQLSDPQ VPFSYQPSLN TEMGQAPFLT TMPSQEGNNP TDSSWVLPSP TPVLATVTDT  300
SISNPGDASS TTSSYGGGTS SYWPEHFFED PIMHEIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G164900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307380.10.0transcription factor MYB93 isoform X1
SwissprotQ9S9Z21e-124MYB93_ARATH; Transcription factor MYB93
TrEMBLB9H7320.0B9H732_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-105myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]