PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G164100.4

Common Name

POPTR_0005s17160g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 670aa MW: 72722.3 Da PI: 4.241

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G164100.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.7e-05	58	81	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++C+ +F +++L +H+ + H Potri.005G164100.4 58 YECHKCTLTFDGQDDLLQHLLSsH 81 99******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.974	58	86	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	60	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MDGRIKLTDK IATSISADQT CKDGKNENDF ISYKALPVTS TSTETGGCPR EVQTGMNYEC 60 HKCTLTFDGQ DDLLQHLLSS HQRSPKQLKC GTSTNEEYCT NIIDDLDCSV AGDVRNLACI 120 NLNRVPPRLI EELNQGRGSD SGLLAPNAKE NMFNDDIIED RNCSSTIDNM VIDDWDADGK 180 GEPITGSCAA IAENVAANLK EQRSSEGCSV GLLNSIAVEI MQEKSSKGDL TGIENNMNSV 240 CTGMLNESKF DDVGKPGTNE LTSVCRDNNT ALVDDNVVIN EQGKNHGGCP VIPFLNEQMH 300 LAENNITGTP KCTIREPCQE EESEGGLLTI SGNEQSFDLK GNVIKVSKGT INVVNHNEVL 360 CLKNNEFGSE IDQSVQTLTN IQERSSNIFS FFPSTNGLTF ASKDEQSHDD ENSMNQLSCT 420 TSAEDKLQEA KTSCNGELCI AFGDNCTEQD ADIVTGTVQE ICFLFAGNQH TLTAKDNATG 480 PFNGTMDELK QKMDSVESVL CLSGDAPMRS VEKNLHTAFT GSIQEEPRVK NTENSKKDDL 540 GHDFSGHPGP NESVESEFVW RNEENGFEGL KSGGMENMEY NLLTSQVSSH SDESKVVSCD 600 AVIPQGFDSS VCLEKGDLPF LPKNASRHHV PAVCVWCGRE ICQEAFESEA QTSTMGFMCA 660 ECAARFSGQ*

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MDGRIKLTDK IATSISADQT CKDGKNENDF ISYKALPVTS TSTETGGCPR EVQTGMNYEC  60
HKCTLTFDGQ DDLLQHLLSS HQRSPKQLKC GTSTNEEYCT NIIDDLDCSV AGDVRNLACI  120
NLNRVPPRLI EELNQGRGSD SGLLAPNAKE NMFNDDIIED RNCSSTIDNM VIDDWDADGK  180
GEPITGSCAA IAENVAANLK EQRSSEGCSV GLLNSIAVEI MQEKSSKGDL TGIENNMNSV  240
CTGMLNESKF DDVGKPGTNE LTSVCRDNNT ALVDDNVVIN EQGKNHGGCP VIPFLNEQMH  300
LAENNITGTP KCTIREPCQE EESEGGLLTI SGNEQSFDLK GNVIKVSKGT INVVNHNEVL  360
CLKNNEFGSE IDQSVQTLTN IQERSSNIFS FFPSTNGLTF ASKDEQSHDD ENSMNQLSCT  420
TSAEDKLQEA KTSCNGELCI AFGDNCTEQD ADIVTGTVQE ICFLFAGNQH TLTAKDNATG  480
PFNGTMDELK QKMDSVESVL CLSGDAPMRS VEKNLHTAFT GSIQEEPRVK NTENSKKDDL  540
GHDFSGHPGP NESVESEFVW RNEENGFEGL KSGGMENMEY NLLTSQVSSH SDESKVVSCD  600
AVIPQGFDSS VCLEKGDLPF LPKNASRHHV PAVCVWCGRE ICQEAFESEA QTSTMGFMCA  660
ECAARFSGQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G164100.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456911.1	0.0	uncharacterized protein LOC7486594 isoform X3
TrEMBL	A0A3N7F4P1	0.0	A0A3N7F4P1_POPTR; Uncharacterized protein
STRING	POPTR_0005s17160.1	0.0	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	Potri.005G164100.4
Entrez Gene	7486594