PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G164100.3

Common Name

POPTR_0005s17160g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 920aa MW: 100852 Da PI: 4.4997

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G164100.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.8e-05	294	317	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++C+ +F +++L +H+ + H Potri.005G164100.3 294 YECHKCTLTFDGQDDLLQHLLSsH 317 99******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	10.618	168	241	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	1.99E-8	175	247	IPR016177	DNA-binding domain
Pfam	PF01429	1.1E-5	177	235	IPR001739	Methyl-CpG DNA binding
Gene3D	G3DSA:3.30.890.10	1.9E-6	177	261	IPR001739	Methyl-CpG DNA binding
PROSITE profile	PS50157	8.974	294	322	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	296	317	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MEMVGKNGVA VDFVALGNME DPYGEELRRR TEGMLGFSQG GVKSLEVNHL ISTRIAESSS 60 KKRKRGRPRK NENVDFGNNE LVERGKIENK TIVVVCDDVE VQNKKKEEME MVSKNGVVVD 120 FVALGNMEDP YGEELRRRTE GMQLKAEFLG FLEGFEGEWG STRKKRRIVD ASLFGDALPI 180 GWKLSICVKK QAGRVWLACT RYISPNGLQF VSCKEVSSYL LSFSGLHDVR RSNFDHMDGR 240 IKLTDKIATS ISADQTCKDG KNENDFISYK ALPVTSTSTE TGGCPREVQT GMNYECHKCT 300 LTFDGQDDLL QHLLSSHQRS PKQLKCGTST NEEYCTNIID DLDCSVAGDV RNLACINLNR 360 VPPRLIEELN QGRGSDSGLL APNAKENMFN DDIIEDRNCS STIDNMVIDD WDADGKGEPI 420 TGSCAAIAEN VAANLKEQRS SEGCSVGLLN SIAVEIMQEK SSKGDLTGIE NNMNSVCTGM 480 LNESKFDDVG KPGTNELTSV CRDNNTALVD DNVVINEQGK NHGGCPVIPF LNEQMHLAEN 540 NITGTPKCTI REPCQEEESE GGLLTISGNE QSFDLKGNVI KVSKGTINVV NHNEVLCLKN 600 NEFGSEIDQS VQTLTNIQER SSNIFSFFPS TNGLTFASKD EQSHDDENSM NQLSCTTSAE 660 DKLQEAKTSC NGELCIAFGD NCTEQDADIV TGTVQEICFL FAGNQHTLTA KDNATGPFNG 720 TMDELKQKMD SVESVLCLSG DAPMRSVEKN LHTAFTGSIQ EEPRVKNTEN SKKDDLGHDF 780 SGHPGPNESV ESEFVWRNEE NGGLRCDFAD TCQPVQASGF FPLYDAVSDK GESEHFGEAY 840 GVISGFEGLK SGGMENMEYN LLTSQGDLPF LPKNASRHHV PAVCVWCGRE ICQEAFESEA 900 QTSTMGFMCA ECAARFSGQ*

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MEMVGKNGVA VDFVALGNME DPYGEELRRR TEGMLGFSQG GVKSLEVNHL ISTRIAESSS  60
KKRKRGRPRK NENVDFGNNE LVERGKIENK TIVVVCDDVE VQNKKKEEME MVSKNGVVVD  120
FVALGNMEDP YGEELRRRTE GMQLKAEFLG FLEGFEGEWG STRKKRRIVD ASLFGDALPI  180
GWKLSICVKK QAGRVWLACT RYISPNGLQF VSCKEVSSYL LSFSGLHDVR RSNFDHMDGR  240
IKLTDKIATS ISADQTCKDG KNENDFISYK ALPVTSTSTE TGGCPREVQT GMNYECHKCT  300
LTFDGQDDLL QHLLSSHQRS PKQLKCGTST NEEYCTNIID DLDCSVAGDV RNLACINLNR  360
VPPRLIEELN QGRGSDSGLL APNAKENMFN DDIIEDRNCS STIDNMVIDD WDADGKGEPI  420
TGSCAAIAEN VAANLKEQRS SEGCSVGLLN SIAVEIMQEK SSKGDLTGIE NNMNSVCTGM  480
LNESKFDDVG KPGTNELTSV CRDNNTALVD DNVVINEQGK NHGGCPVIPF LNEQMHLAEN  540
NITGTPKCTI REPCQEEESE GGLLTISGNE QSFDLKGNVI KVSKGTINVV NHNEVLCLKN  600
NEFGSEIDQS VQTLTNIQER SSNIFSFFPS TNGLTFASKD EQSHDDENSM NQLSCTTSAE  660
DKLQEAKTSC NGELCIAFGD NCTEQDADIV TGTVQEICFL FAGNQHTLTA KDNATGPFNG  720
TMDELKQKMD SVESVLCLSG DAPMRSVEKN LHTAFTGSIQ EEPRVKNTEN SKKDDLGHDF  780
SGHPGPNESV ESEFVWRNEE NGGLRCDFAD TCQPVQASGF FPLYDAVSDK GESEHFGEAY  840
GVISGFEGLK SGGMENMEYN LLTSQGDLPF LPKNASRHHV PAVCVWCGRE ICQEAFESEA  900
QTSTMGFMCA ECAARFSGQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G164100.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456910.1	0.0	uncharacterized protein LOC7486594 isoform X2
TrEMBL	A0A3N7F4P1	0.0	A0A3N7F4P1_POPTR; Uncharacterized protein
STRING	POPTR_0005s17160.1	0.0	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	Potri.005G164100.3
Entrez Gene	7486594