PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G164100.2

Common Name

POPTR_0005s17160g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 1159aa MW: 127818 Da PI: 4.7036

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G164100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.8e-05	533	556	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++C+ +F +++L +H+ + H Potri.005G164100.2 533 YECHKCTLTFDGQDDLLQHLLSsH 556 99******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02178	0.11	193	203	IPR017956	AT hook, DNA-binding motif
SMART	SM00384	0.54	193	205	IPR017956	AT hook, DNA-binding motif
Pfam	PF02178	0.11	301	311	IPR017956	AT hook, DNA-binding motif
SMART	SM00384	0.54	301	313	IPR017956	AT hook, DNA-binding motif
PROSITE profile	PS50982	10.618	407	480	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	2.75E-8	414	486	IPR016177	DNA-binding domain
Pfam	PF01429	1.4E-5	416	474	IPR001739	Methyl-CpG DNA binding
Gene3D	G3DSA:3.30.890.10	2.6E-6	416	500	IPR001739	Methyl-CpG DNA binding
PROSITE profile	PS50157	8.974	533	561	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	535	556	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1159 aa Download sequence Send to blast
MATATVDSSV CNYQNQVHTE SLLLIDLRHL SQPELLSLSF CSSSSSLHRL QTDTADVSTP 60 KIDRSVFNES AGSRKQTFSR LRLAPRNNNA SSSSNSTPVV PYQITERHPL DEENSQIIYL 120 LKSLFGSDSH FIENNNENNH NLVSVPVIYN EYMRLPCTNN AELQNVGFSQ GGVKSLEVNH 180 LISTRIAESS SKKRKRGRPR KNENVDFGYN ELEERKKIEN KTIAVVCDDV EVQNKKKEEM 240 EMVGKNGVAV DFVALGNMED PYGEELRRRT EGMLGFSQGG VKSLEVNHLI STRIAESSSK 300 KRKRGRPRKN ENVDFGNNEL VERGKIENKT IVVVCDDVEV QNKKKEEMEM VSKNGVVVDF 360 VALGNMEDPY GEELRRRTEG MQLKAEFLGF LEGFEGEWGS TRKKRRIVDA SLFGDALPIG 420 WKLSICVKKQ AGRVWLACTR YISPNGLQFV SCKEVSSYLL SFSGLHDVRR SNFDHMDGRI 480 KLTDKIATSI SADQTCKDGK NENDFISYKA LPVTSTSTET GGCPREVQTG MNYECHKCTL 540 TFDGQDDLLQ HLLSSHQRSP KQLKCGTSTN EEYCTNIIDD LDCSVAGDVR NLACINLNRV 600 PPRLIEELNQ GRGSDSGLLA PNAKENMFND DIIEDRNCSS TIDNMVIDDW DADGKGEPIT 660 GSCAAIAENV AANLKEQRSS EGCSVGLLNS IAVEIMQEKS SKGDLTGIEN NMNSVCTGML 720 NESKFDDVGK PGTNELTSVC RDNNTALVDD NVVINEQGKN HGGCPVIPFL NEQMHLAENN 780 ITGTPKCTIR EPCQEEESEG GLLTISGNEQ SFDLKGNVIK VSKGTINVVN HNEVLCLKNN 840 EFGSEIDQSV QTLTNIQERS SNIFSFFPST NGLTFASKDE QSHDDENSMN QLSCTTSAED 900 KLQEAKTSCN GELCIAFGDN CTEQDADIVT GTVQEICFLF AGNQHTLTAK DNATGPFNGT 960 MDELKQKMDS VESVLCLSGD APMRSVEKNL HTAFTGSIQE EPRVKNTENS KKDDLGHDFS 1020 GHPGPNESVE SEFVWRNEEN GGLRCDFADT CQPVQASGFF PLYDAVSDKG ESEHFGEAYG 1080 VISGFEGLKS GGMENMEYNL LTSQGDLPFL PKNASRHHVP AVCVWCGREI CQEAFESEAQ 1140 TSTMGFMCAE CAARFSGQ*

Sequence ? help Back to Top

Protein Sequence Length: 1159 aa Download sequence Send to blast

MATATVDSSV CNYQNQVHTE SLLLIDLRHL SQPELLSLSF CSSSSSLHRL QTDTADVSTP  60
KIDRSVFNES AGSRKQTFSR LRLAPRNNNA SSSSNSTPVV PYQITERHPL DEENSQIIYL  120
LKSLFGSDSH FIENNNENNH NLVSVPVIYN EYMRLPCTNN AELQNVGFSQ GGVKSLEVNH  180
LISTRIAESS SKKRKRGRPR KNENVDFGYN ELEERKKIEN KTIAVVCDDV EVQNKKKEEM  240
EMVGKNGVAV DFVALGNMED PYGEELRRRT EGMLGFSQGG VKSLEVNHLI STRIAESSSK  300
KRKRGRPRKN ENVDFGNNEL VERGKIENKT IVVVCDDVEV QNKKKEEMEM VSKNGVVVDF  360
VALGNMEDPY GEELRRRTEG MQLKAEFLGF LEGFEGEWGS TRKKRRIVDA SLFGDALPIG  420
WKLSICVKKQ AGRVWLACTR YISPNGLQFV SCKEVSSYLL SFSGLHDVRR SNFDHMDGRI  480
KLTDKIATSI SADQTCKDGK NENDFISYKA LPVTSTSTET GGCPREVQTG MNYECHKCTL  540
TFDGQDDLLQ HLLSSHQRSP KQLKCGTSTN EEYCTNIIDD LDCSVAGDVR NLACINLNRV  600
PPRLIEELNQ GRGSDSGLLA PNAKENMFND DIIEDRNCSS TIDNMVIDDW DADGKGEPIT  660
GSCAAIAENV AANLKEQRSS EGCSVGLLNS IAVEIMQEKS SKGDLTGIEN NMNSVCTGML  720
NESKFDDVGK PGTNELTSVC RDNNTALVDD NVVINEQGKN HGGCPVIPFL NEQMHLAENN  780
ITGTPKCTIR EPCQEEESEG GLLTISGNEQ SFDLKGNVIK VSKGTINVVN HNEVLCLKNN  840
EFGSEIDQSV QTLTNIQERS SNIFSFFPST NGLTFASKDE QSHDDENSMN QLSCTTSAED  900
KLQEAKTSCN GELCIAFGDN CTEQDADIVT GTVQEICFLF AGNQHTLTAK DNATGPFNGT  960
MDELKQKMDS VESVLCLSGD APMRSVEKNL HTAFTGSIQE EPRVKNTENS KKDDLGHDFS  1020
GHPGPNESVE SEFVWRNEEN GGLRCDFADT CQPVQASGFF PLYDAVSDKG ESEHFGEAYG  1080
VISGFEGLKS GGMENMEYNL LTSQGDLPFL PKNASRHHVP AVCVWCGREI CQEAFESEAQ  1140
TSTMGFMCAE CAARFSGQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G164100.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456910.1	0.0	uncharacterized protein LOC7486594 isoform X2
TrEMBL	A0A3N7F4P1	0.0	A0A3N7F4P1_POPTR; Uncharacterized protein
STRING	POPTR_0005s17160.1	0.0	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	Potri.005G164100.2
Entrez Gene	7486594