PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G158800.1 | ||||||||
Common Name | POPTR_0005s17620g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 258aa MW: 27728.6 Da PI: 6.9193 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.3 | 3.3e-32 | 58 | 113 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++rY+eC+kNhA+ +Ggha+DGCgEfm++ geegt +alkCaAC+CHRnFHR+e++ Potri.005G158800.1 58 SSIRYRECQKNHAVGIGGHALDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKETD 113 5789*************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-29 | 60 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-23 | 61 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-29 | 61 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.541 | 62 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.14E-20 | 180 | 252 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.2E-32 | 181 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-25 | 194 | 250 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEFDEHEDQE EEMTGMAVMP PGYDSISNSA TARSKMGPTG GGGEGASTTA ANTNTRKSSI 60 RYRECQKNHA VGIGGHALDG CGEFMAAGEE GTLDALKCAA CNCHRNFHRK ETDGGGGGEV 120 ILYHGHHHQQ QPQFPPYYRA PPPAGYLHHL TPTPQPRPLA LPAASGGGYS REEEDVSNPS 180 SSGGGGGGGG SSSKKRFRTK FSQEQKEKMV AFAERLGWRI QKHDEAAVEQ FCAENGVKRH 240 VLKVWMHNNK HTIEIGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-29 | 193 | 252 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11992 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G158800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306552.2 | 0.0 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6YXH5 | 7e-75 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9SB61 | 1e-75 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | B9H6X7 | 0.0 | B9H6X7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s17620.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 6e-64 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G158800.1 |
Entrez Gene | 7468872 |
Publications ? help Back to Top | |||
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