PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G155300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25573.4 Da    PI: 8.1247
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G155300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.4e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n   rqvtfskRr g+lKKAeELSvLCd+evaviifs tgkl+eyss
  Potri.005G155300.1  9 KKIDNVAARQVTFSKRRRGLLKKAEELSVLCDVEVAVIIFSATGKLFEYSS 59
                        689**********************************************96 PP

2K-box45.53.3e-16851701398
               K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         + +  + ++ +L+ke+++  +++R++ Ge+L+ L+++eLqqLe+ Le +l  + ++K e ++++i++l +k  +l eenk L++k+
  Potri.005G155300.1  85 ELQLENSNHMRLRKEVSEKSHQLRRMRGEELQGLNIEELQQLEKVLEVGLCCVLETKGERIMNEISTLERKGAQLLEENKHLKQKM 170
                         55666778899*************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.226161IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.60E-37275No hitNo description
PRINTSPR004043.0E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-30383IPR002100Transcription factor, MADS-box
PfamPF003191.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.1886176IPR002487Transcription factor, K-box
PfamPF014863.1E-1490170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAREKIKIKK IDNVAARQVT FSKRRRGLLK KAEELSVLCD VEVAVIIFSA TGKLFEYSSS  60
SMKDVLARYN LHSNNLDKLN QPSLELQLEN SNHMRLRKEV SEKSHQLRRM RGEELQGLNI  120
EELQQLEKVL EVGLCCVLET KGERIMNEIS TLERKGAQLL EENKHLKQKM TTICKGKRPA  180
LVDLDTAVQE ERMSSESTSN VCCSSSGPPV EDDSSDTSLK LGLAILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-21169169MEF2C
5f28_B7e-21169169MEF2C
5f28_C7e-21169169MEF2C
5f28_D7e-21169169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G155300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5013920.0AY501392.1 Populus tomentosa MADS box transcription factor (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456560.11e-164MADS-box protein JOINTLESS isoform X1
RefseqXP_024456725.11e-164MADS-box protein JOINTLESS-like isoform X1
SwissprotQ9FUY61e-95JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2K2AH951e-162A0A2K2AH95_POPTR; Uncharacterized protein
STRINGEOY154441e-127(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Representative plantOGRP60761120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]