PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G152500.3 | ||||||||
Common Name | POPTR_0005s19550g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 353aa MW: 38287.7 Da PI: 5.732 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.9 | 4.3e-16 | 218 | 254 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ Potri.005G152500.3 218 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGS 254 *******99************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 13.043 | 78 | 113 | IPR010399 | Tify domain |
SMART | SM00979 | 9.9E-8 | 78 | 113 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.9E-10 | 81 | 112 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.65 | 146 | 188 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.8E-15 | 146 | 187 | IPR010402 | CCT domain |
SMART | SM00401 | 1.1E-8 | 212 | 265 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.66E-11 | 216 | 262 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 216 | 259 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.36E-15 | 217 | 261 | No hit | No description |
Pfam | PF00320 | 6.4E-14 | 218 | 254 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 218 | 245 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MAAAAATTTN PQSLQARPYE DPRTRASIQI DDDDGEYEDA DGMDGMKEAA TVAQVNSGVS 60 VAEHHRGVRV GVGGGVVTTS RTSELTLSFE GEVYVFPAVT PEKVQAVLLL LGGRDMPTAV 120 PTIEVPYDQN NRGVVDNPKF SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMHR 180 KNGQFASLKE SPGSSSWDSS QSCLQDVIPC PETVVRRCQH CGVSENNTPA MRRGPAGPRT 240 LCNACGLMWA NKGSLRDLSK GGRNLPMGQI EPGTPIDVKP SIMEGEFSGN QDEHGTAKNL 300 PKAVNEGFNN RSINPDEVLQ EADQDLTNTL PMGAVHSSGD DDEQPFGQAS YP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G152500.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458029.1 | 0.0 | GATA transcription factor 24 isoform X4 | ||||
Swissprot | Q8H1G0 | 1e-65 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | B9H6T4 | 0.0 | B9H6T4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s19550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 2e-66 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G152500.3 |
Entrez Gene | 7468843 |