PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G148400.1
Common NamePOPTR_0005s19220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 668aa    MW: 73255.3 Da    PI: 7.3708
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G148400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-15326385155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+ ++ a++k++g
  Potri.005G148400.1 326 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARSYDLAALKYWG 385
                         78*******************988886678446*************************98 PP
2AP246.49.6e-15428479155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.005G148400.1 428 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 479
                         57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-12326385IPR001471AP2/ERF domain
CDDcd000187.99E-21326393No hitNo description
SuperFamilySSF541719.81E-16326395IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-15327394IPR001471AP2/ERF domain
PROSITE profilePS5103218.9327393IPR001471AP2/ERF domain
SMARTSM003802.0E-28327399IPR001471AP2/ERF domain
PRINTSPR003678.8E-6328339IPR001471AP2/ERF domain
PfamPF008471.4E-9428479IPR001471AP2/ERF domain
CDDcd000187.79E-25428489No hitNo description
SuperFamilySSF541711.77E-17428488IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-18429487IPR001471AP2/ERF domain
PROSITE profilePS5103218.913429487IPR001471AP2/ERF domain
SMARTSM003801.1E-33429493IPR001471AP2/ERF domain
PRINTSPR003678.8E-6469489IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MKSMSNNNNG SNNNWLGFSL SPHMKMEAAS DPQHHHQYHH QTQTHAPTAD SVSAAVPTSF  60
YLSTSLFNSS GICYGVGENG GFHSPLSVMP LKSDGSLCIM EALTRSQPEG MVSSPSPKLE  120
DFLGGATMES HQYSSHEREA MALSLDSIYY QQSSEPETNR QHSLNLYEPY RQQDQQFSVQ  180
THPYYSGIAC QGLYQAPLEG ETKGTQLADC NSPIPLMGDD ELPCLKNWAA RHYSSQNVLE  240
QQINSGMVND GGASCSASAV GCGDLQSLSL SMSPGSQSSC ITAPRQISPA GTECVAIETK  300
KRGPVKVGQK QPVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQTRKGRQ  360
VYLGGYDMEE KAARSYDLAA LKYWGPSTHI NFPLENYQEE LEEMKNMGRQ EYVAHLRRKS  420
SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGV  480
NAVTNFNITR YDVDRIMASN TLLAGELARR NRDKESSIEA IDYNTSTQNN CVLYQSPQEQ  540
PNASGESLNQ KSMSAGNYRS TSFSVAVQDL MGIDHSVNSS QPVVDESAKL GGTHLSNPSS  600
LVTSLSSSRE ASPDKTGTPV LFAKPPRASK FIGPTTSVTP WIQAAAQLRP AGISMAHLPV  660
FAAWNDT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.19570.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G148400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM8536701e-175HM853670.1 Populus tremula x Populus alba aintegumenta (ANT) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456512.10.0uncharacterized protein LOC7476433
SwissprotQ84Z021e-145CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2K2AH020.0A0A2K2AH02_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-133AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]