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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.005G145600.1 |
| Common Name | POPTR_0005s18920g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 458aa MW: 51665 Da PI: 6.0477 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.005G145600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 305.2 | 1.6e-93 | 53 | 454 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsev 87
++lL++cA+a++s++++l q++++ l+++a pdgd++qRl++ f++AL ar ++ s ++k l++ +++++n +++++++ +l f++v
Potri.005G145600.1 53 EQLLVHCANAIESNNATLSQQIVWVLNNIAPPDGDSNQRLTFAFLRALIARATK--SCTCKLLAAMANAHYNlalHTHKFSVIELasFVDV 141
79****************************************************..5566666666666666344555555655588**** PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvp 175
+P+++f++ +aN aIleaveg +Hi+D+++++++Q p+L++a+a+R e pp +++T+ g+ e + ++ee+g++L +fA + +v
Potri.005G145600.1 142 TPWHRFGFTAANAAILEAVEGYLVIHIVDLSLTHCMQIPTLIDAIANRFEVPPLIKLTVAGATEDVppmLDLSYEELGSKLVNFAWSRNVI 232
**************************************************************887798888999***************** PP
GRAS 176 fefnvl...vakrledleleeLrvkp......gEalaVnlvlqlhrll..................desvsleserdevLklvkslsPkvv 239
+ef+++ +a+ +++l +e+Lrv++ gEal++n++++lh+++ ++ s++s r+++Lk ++sl P++v
Potri.005G145600.1 233 MEFRIIpssYADGFSSL-IEQLRVQHlvhaesGEALVINCHMMLHYIPeetlsdfpssksnpysyeSSCSSMSSFRTTFLKSLRSLDPTIV 322
******99855555555.55555555555558********************************96666777789**************** PP
GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
v+v+++ad++s+++ r+ +a++y + fd++++ lpr s++r+++E+ + ++i+n++a+eg +r+er e + +W +r+++a F+ +++
Potri.005G145600.1 323 VLVDEDADLTSNNLESRLRSAFNYLWIPFDTVDTFLPRGSKQRQWYEAD-VCWKIMNLIAHEGLQRVERLEPKIQWIQRMRNADFRGISFA 412
*************************************************.99*************************************** PP
GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
e+a +++k++l +++ g+ +++e++ lvl+Wk++++v++SaW
Potri.005G145600.1 413 EDAISEVKTMLDEHA-AGWGLKKEDDDLVLTWKGHNVVFASAW 454
***************.999************************ PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 458 aa
Download sequence Send
to blast |
MQSTETPLPH WHQIITPFSN PTMNINQTQR TRHWPGFPTS KSLRSFGDAN CMEQLLVHCA 60
NAIESNNATL SQQIVWVLNN IAPPDGDSNQ RLTFAFLRAL IARATKSCTC KLLAAMANAH 120
YNLALHTHKF SVIELASFVD VTPWHRFGFT AANAAILEAV EGYLVIHIVD LSLTHCMQIP 180
TLIDAIANRF EVPPLIKLTV AGATEDVPPM LDLSYEELGS KLVNFAWSRN VIMEFRIIPS 240
SYADGFSSLI EQLRVQHLVH AESGEALVIN CHMMLHYIPE ETLSDFPSSK SNPYSYESSC 300
SSMSSFRTTF LKSLRSLDPT IVVLVDEDAD LTSNNLESRL RSAFNYLWIP FDTVDTFLPR 360
GSKQRQWYEA DVCWKIMNLI AHEGLQRVER LEPKIQWIQR MRNADFRGIS FAEDAISEVK 420
TMLDEHAAGW GLKKEDDDLV LTWKGHNVVF ASAWLPV*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
