PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G145500.1 | ||||||||
Common Name | POPTR_0005s18900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 243aa MW: 26199.5 Da PI: 6.012 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.7 | 1.4e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++ Potri.005G145500.1 2 SCNGCRVLRKGCSENCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISSVPEDQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWH 92 6****************************************************************************************** PP DUF260 87 leqlkaelall 97 ++q+++e++l+ Potri.005G145500.1 93 VCQAAVETVLR 103 *****998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.967 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.3E-27 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISSVPEDQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PDLLTGGGSP 120 SSSPPSDEAS EFEVACTDIW KLQDPNPNPI HHSRFSNSRS RVSSKRKGTE EPMVVNMRHD 180 DLDLLLTPST SQKGFAEICR PGTPSMNSEE SVTTNATCFD SAGFGDQYGN GGGETKLLNL 240 FL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G145500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148830 | 0.0 | EF148830.1 Populus trichocarpa x Populus deltoides clone WS0138_O01 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306497.1 | 1e-180 | LOB domain-containing protein 37 | ||||
Swissprot | Q9SN23 | 2e-89 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | B9H6M3 | 1e-179 | B9H6M3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s18900.1 | 1e-180 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 2e-82 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G145500.1 |
Entrez Gene | 7476419 |