PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.005G142600.1 | ||||||||
Common Name | POPTR_0005s18620g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 352aa MW: 37910.4 Da PI: 8.7247 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.4 | 2.1e-20 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l+++v+++G+++W++I++ ++ gR++k+c++rw + Potri.005G142600.1 12 KGPWSPEEDEALKKLVQRHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.9e-18 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+++++a++++G++ W+tIar ++ gRt++ +k++w++ Potri.005G142600.1 66 AFTPEEDDRIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.938 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-32 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-18 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-20 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.68E-17 | 14 | 56 | No hit | No description |
SMART | SM00717 | 5.7E-15 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.717 | 64 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-15 | 66 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.87E-12 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 352 aa Download sequence Send to blast |
MATTRKEMDR IKGPWSPEED EALKKLVQRH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 QVEHRAFTPE EDDRIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMADDG 120 NLSNLEGYDG NLDVDDTQPS KRSVSAGSGV PLSTGLYMSP GSPSGSDVSD SSPPGLSSAH 180 NHNIYRPVAR TGGVLPPVET ASSSDNNDDD PPTLLSLSLP GADPATKLPN RVVEPTQERV 240 AGSTQERVAG STKERVAGST QEPKPNTVTS FLVAADPAQV TTPVVAGQTG RPGCGFVGLS 300 RELMTVMQEM IRREVRNYMM EQSGGGMCYQ GMSGEGFRNV AVNRVGVGKI E* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-40 | 11 | 112 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-40 | 11 | 112 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00632 | PBM | Transfer from PK28565.1 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.005G142600.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306488.3 | 0.0 | transcription factor MYB44 | ||||
Swissprot | O23160 | 1e-104 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A2K2AGN8 | 0.0 | A0A2K2AGN8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s18620.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 5e-81 | myb domain protein 73 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.005G142600.1 |
Entrez Gene | 7476405 |
Publications ? help Back to Top | |||
---|---|---|---|
|