PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G141400.1
Common NamePOPTR_0005s18490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 332aa    MW: 36633.4 Da    PI: 9.6976
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G141400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31260317359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeH h+
  Potri.005G141400.1 260 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHSHT 317
                         99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.9E-17211256IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-32246317IPR003657WRKY domain
PROSITE profilePS5081130.435253319IPR003657WRKY domain
SuperFamilySSF1182901.31E-26256317IPR003657WRKY domain
SMARTSM007742.6E-37258318IPR003657WRKY domain
PfamPF031069.9E-27260316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAVELMMAYR NSGFLVTKME ENAVEEEASG LESVNKLIRL LSQQNQENLH QSSTPTSRTS  60
MDVEMDCKAV ADVAVPKFKK VVSLLPRNRT GHARFRRAPV STPPVNQRQE QDYQVLEANQ  120
VYYATPIQQI PPPVHNQNHY PIVEPKNGEI ERKDSATTIN FSCSSAGNSF VSSLTGDTDS  180
KQPSSSSSFH ITNVSRVSSA GKPPLSTSSL KRKCSSENSD SAGKCASSGR CRCSKKRKMR  240
LKRVVRVPAI SLKMSDIPPD DYSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERAL  300
DDPSMLVVTY EGEHSHTISV AETSNLILES S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20246318273WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.780.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G141400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774400.0GQ377440.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383530.10.0probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX07e-91WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLU5GIR00.0U5GIR0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Representative plantOGRP8844615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-82WRKY DNA-binding protein 7