PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G140700.1 | ||||||||
Common Name | POPTR_0005s18400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 514aa MW: 57063.8 Da PI: 6.8354 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.6e-17 | 170 | 219 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Potri.005G140700.1 170 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 219 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.6 | 7.3e-14 | 262 | 312 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Potri.005G140700.1 262 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDRAAMKCNG 312 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.9E-15 | 170 | 228 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.0E-9 | 170 | 219 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-17 | 171 | 227 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-31 | 171 | 233 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.53 | 171 | 227 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.27E-11 | 171 | 228 | No hit | No description |
Pfam | PF00847 | 6.5E-10 | 262 | 312 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.88E-25 | 262 | 322 | No hit | No description |
SuperFamily | SSF54171 | 4.71E-17 | 262 | 322 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-16 | 263 | 320 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-31 | 263 | 326 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.422 | 263 | 320 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-6 | 264 | 275 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-6 | 302 | 322 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MWNLNDSPDQ TRDDESEGCS SQKTSKDGEV DKGKRVGSVS NSSSSAVVIE DGSEEEDGCG 60 ERGDRIIKKH SISFSSSTSS KIFGFSVPYD QDSMDMSDPP VTRQFFPLED QEMGSTSSVG 120 GGDGGGGGFP RAHWVGVKFC QSDSSLVSQK SMEVSQPLKK SRRGPRSRSS QYRGVTFYRR 180 TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFRIED YEEDLKQMSN 240 LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEIEAA 300 RAYDRAAMKC NGKEAVTNFD PSIYENELGK QFNSEDIQES SGNAAAHNLD LSLGNPASKQ 360 SSIEFGQDRH NAAMEQLSAA MPLEPNWQNR GFRPKLDLYR GDNDGHGRDG YRETETTQLL 420 SKIHIQSLAS LKSSEMPTYV QFRRSHGDGQ MLHVLPPQFN PPNYQVQYPS SSSGGRIGSD 480 LSLSPTELHH RHHYQQWQAG PPQFANAAAS SGF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.10494 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: It is detectable at low levels throughout the shoot apex and at enhanced levels in the inflorescence meristem, young floral buds and throughout the early stages of flower development and organogenesis. During floral organ differentiation it becomes spatially restricted to specific organ, tissue and cell types within the flower. | |||||
Uniprot | TISSUE SPECIFICITY: Sepals, petals, stamens, carpels, developing ovules, inflorescence stem, leaf and stem. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G140700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC477268 | 0.0 | KC477268.1 Populus tomentosa AP2-2 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456126.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Refseq | XP_024456127.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | P47927 | 1e-128 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2K2AGM0 | 0.0 | A0A2K2AGM0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s18400.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 | Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-118 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G140700.1 |
Entrez Gene | 7489744 |