PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G134200.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 332aa MW: 35465.7 Da PI: 9.7771

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G134200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.6e-39	52	111	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++s Potri.005G134200.1 52 QEKLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNTS 111 7899*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-26	52	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-33	53	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MIQELLGGAG LISGERKIPI NATILDQGAP SPSPSSSTTT TTSATNSTPS AQEKLRCPRC 60 DSSNTKFCYY NNYNLTQPRH FCKTCRRYWT KGGALRNVPI GGGCRKNKNT SVSASVGKSG 120 TSKIKTIASE IGRSGFGNGF DYELSSSPIM RASPQNSHIF ALLRATQNPN PSTPCNSISV 180 KQEGFLIGKH MISEPAVETA ALNARILGLD PISQVSSLGL CSPSWKSNQH QQNRYTVGEA 240 QNSGIQELYQ RLRSSTNYYT DNPSAIVLSN VTTSSSTSTS TSSTILESAP VAGGEFSYWN 300 QAFSWSGLPT TNGFNSALPR VLQGSKQLLI L*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.13123	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G134200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144749	0.0	EF144749.1 Populus trichocarpa clone WS01117_M16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456610.1	0.0	dof zinc finger protein DOF2.4
TrEMBL	A0A2K2AG93	0.0	A0A2K2AG93_POPTR; Uncharacterized protein
STRING	POPTR_0007s11620.1	1e-163	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Potri.005G134200.1