PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G126400.3 | ||||||||
Common Name | POPTR_0005s12790g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | BES1 | ||||||||
Protein Properties | Length: 332aa MW: 36083.4 Da PI: 8.3292 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 215.1 | 1.6e-66 | 5 | 148 | 1 | 148 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 g+s r ptwkErEnn rRERrRRaiaakiy+GLR qGnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ +e+ag a++s + Potri.005G126400.3 5 GSSARLPTWKERENNMRRERRRRAIAAKIYTGLRTQGNYKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGCKPP-PSEIAGMPANISAC 94 5899************************************************************************.************** PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148 ss+q s++ss++aspv+sy+asp+sssfpsp+ +d +s+ + llp+l++ ++++ Potri.005G126400.3 95 SSIQPSPQSSNFASPVPSYHASPSSSSFPSPTCFDGNSS---TYLLPFLRNIASIPT 148 ***********************************9966...699999999887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.0E-62 | 7 | 130 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MTAGGSSARL PTWKERENNM RRERRRRAIA AKIYTGLRTQ GNYKLPKHCD NNEVLKALCA 60 EAGWIVEEDG TTYRKGCKPP PSEIAGMPAN ISACSSIQPS PQSSNFASPV PSYHASPSSS 120 SFPSPTCFDG NSSTYLLPFL RNIASIPTNL PPLRISNSAP VTPPRSSPTC RSSKRKVDWE 180 SLSNGSLNSF RHPLFAASAP SSPTRRPHLT PATIPECDES DASTVDSGRW LSFQAVAPQV 240 APPSPTFNLV KPVDQQCAFQ IGVDRHEGLS WGVAAERGRG AEFEFENCRV KPWEGERIHE 300 IGVDDLELTL GSGKVHGQAS IDDLAWERSN K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 6e-30 | 9 | 86 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 6e-30 | 9 | 86 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 6e-30 | 9 | 86 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 6e-30 | 9 | 86 | 372 | 449 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.335 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G126400.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148014 | 0.0 | EF148014.1 Populus trichocarpa clone WS0126_M10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383241.1 | 0.0 | BES1/BZR1 homolog protein 2 | ||||
Swissprot | Q94A43 | 1e-117 | BEH2_ARATH; BES1/BZR1 homolog protein 2 | ||||
TrEMBL | A9PI05 | 0.0 | A9PI05_POPTR; BES1 family protein | ||||
STRING | POPTR_0005s12790.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75080.2 | 4e-90 | BES1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G126400.3 |
Entrez Gene | 18099311 |
Publications ? help Back to Top | |||
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