PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.005G126400.1

Common Name

POPTR_0005s12790g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BES1

Protein Properties

Length: 332aa MW: 36083.4 Da PI: 8.3292

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.005G126400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	215.1	1.6e-66	5	148	1	148
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 g+s r ptwkErEnn rRERrRRaiaakiy+GLR qGnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ +e+ag a++s + Potri.005G126400.1 5 GSSARLPTWKERENNMRRERRRRAIAAKIYTGLRTQGNYKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGCKPP-PSEIAGMPANISAC 94 5899**********************************************************************.********** PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148 ss+q s++ss++aspv+sy+asp+sssfpsp+ +d +s+ + llp+l++ ++++ Potri.005G126400.1 95 SSIQPSPQSSNFASPVPSYHASPSSSSFPSPTCFDGNSS---TYLLPFLRNIASIPT 148 *********************************9966...699999999887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.0E-62	7	130	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009741	Biological Process	response to brassinosteroid
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MTAGGSSARL PTWKERENNM RRERRRRAIA AKIYTGLRTQ GNYKLPKHCD NNEVLKALCA 60 EAGWIVEEDG TTYRKGCKPP PSEIAGMPAN ISACSSIQPS PQSSNFASPV PSYHASPSSS 120 SFPSPTCFDG NSSTYLLPFL RNIASIPTNL PPLRISNSAP VTPPRSSPTC RSSKRKVDWE 180 SLSNGSLNSF RHPLFAASAP SSPTRRPHLT PATIPECDES DASTVDSGRW LSFQAVAPQV 240 APPSPTFNLV KPVDQQCAFQ IGVDRHEGLS WGVAAERGRG AEFEFENCRV KPWEGERIHE 300 IGVDDLELTL GSGKVHGQAS IDDLAWERSN K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	6e-30	9	86	372	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	6e-30	9	86	372	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	6e-30	9	86	372	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	6e-30	9	86	372	449	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.335	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.005G126400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148014	0.0	EF148014.1 Populus trichocarpa clone WS0126_M10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006383241.1	0.0	BES1/BZR1 homolog protein 2
Swissprot	Q94A43	1e-117	BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBL	A9PI05	0.0	A9PI05_POPTR; BES1 family protein
STRING	POPTR_0005s12790.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1275	34	105
Representative plant	OGRP3719	10	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75080.2	4e-90	BES1 family protein

Link Out ? help Back to Top
Phytozome	Potri.005G126400.1
Entrez Gene	18099311

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]