PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G126000.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 356aa MW: 37521.9 Da PI: 5.0046 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 71.6 | 1.1e-22 | 256 | 318 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++ N L++el++l++e+ klkse+ Potri.005G126000.2 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQVRVENLSNDNCNLRDELQSLSEECNKLKSEN 318 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 6.5E-32 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 2.3E-20 | 250 | 316 | No hit | No description |
SMART | SM00338 | 7.4E-18 | 256 | 320 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.4E-21 | 256 | 318 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.829 | 258 | 317 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.02E-11 | 259 | 316 | No hit | No description |
CDD | cd14702 | 1.01E-24 | 261 | 312 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 263 | 278 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MGTREESTPA KPSKPASSNQ EIPATPSYPD WSNSVQAYYG AGATPPPFFA STVASPTPHP 60 YIWGSQHPLI PPYGTPVPYP ALYPAGGVYA HPNMAPTPNS APANTELEGK VPDGKDHASA 120 KKAKGTSGGK AGESGKAISD SGNDGASQSA ESGTDGSSDS SDENTNQQEN AANKKGSFNQ 180 MLADANAQSN SAGANIQTSV PGKPVGSMPA TNLNIGMDLW NASPDASGTT KMRPNPSGAS 240 SGIVPAGMPE QWIQDERELK RQKRKQSNRE SARRSRLRKQ AECEELQVRV ENLSNDNCNL 300 RDELQSLSEE CNKLKSENDF IKEELTRLYG PEAVANLEQT NPVSDPKSHG GEGDS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 272 | 278 | RRSRLRK |
2 | 272 | 279 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.313 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G126000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148192 | 0.0 | EF148192.1 Populus trichocarpa clone WS0128_J07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456161.1 | 0.0 | G-box-binding factor 1 | ||||
Refseq | XP_024456162.1 | 0.0 | G-box-binding factor 1 | ||||
Swissprot | P42774 | 1e-126 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A2K2AFX4 | 0.0 | A0A2K2AFX4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s12750.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 1e-110 | G-box binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G126000.2 |