PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G125800.1 | ||||||||
Common Name | POPTR_0005s12730g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 549aa MW: 61628.1 Da PI: 6.8651 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 307.9 | 2.4e-94 | 178 | 547 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++ L+++A++++s++l+ aq +L+rl+++ +sp+g+p+qR+a++f+eAL++ l+ ++ + +p s++n++++++a+k+f+ +sPi+ Potri.005G125800.1 178 IQELIKAADCFDSNELQVAQVILERLNHRhQSPNGKPLQRAAFFFKEALQSLLTT--GSTRPQTNPVVPSWSNTVQTIKAYKAFFSISPIP 266 689*************************99************************9..33333445555556679***************** PP GRAS 92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg.....ppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 f+ +t+NqaIl++++g+ +H+iDfdi+ G ++++L+++L +++++ +p lRiT+v+ ++ ++ ++erL++fA+el+++f Potri.005G125800.1 267 MFTDFTTNQAILDSLNGNsVFLHVIDFDIGFGCHYASLMRELVDKADScnkitTPLLRITAVVTED--TVIGTKLIKERLSQFAHELKIRF 355 ******************5667***********************944445669**********55..99999****************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyy 264 + ++++ ++e+l+++++++ +gE++aV l+ ++r l ++ ++ + +++ ++++sP vv++v++e ++s+ sF + +++le+y Potri.005G125800.1 356 HVEFVLFPTFEMLSFKAIKFFEGEKIAVLLSPTIFRHLGST---NN-VTMFVNDFRRVSPSVVIFVDSEGWTESGarlSFRRNYVNCLEFY 442 *****999******************************444...44.556*******************7664444559************ PP GRAS 265 salfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 s++f+sl+a + ++ ++++k+E ll+++i +v g++ ++ Wre + aG+++v+ls++a qa++ll kv+++g+ v ++ Potri.005G125800.1 443 SMMFESLDAAVITAGgDWARKIEMCLLKPKILAAVEGCGRR------MVSPWREVFAGAGMRAVQLSQFADFQAECLLGKVQVRGFYVAKR 527 *******666554445*******************999987......689***************************************** PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 +++lvl+W+drpL+++SaW+ Potri.005G125800.1 528 QAELVLCWHDRPLIATSAWK 547 *******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.473 | 151 | 527 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.3E-92 | 178 | 547 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MKVPAPSPQN SSSSNNQSQN PKPVSCNNTN NNSRNISFNP SNRNLCYEPT SVLDLRRSPS 60 PARAGKPASA TDPIEWEDHV LQTLDWDSIM RELDFHDDSA PALIKNFPQF GPCSEPQIQS 120 HNLPEFTASQ QIDATQFLNS EFNDMYINSI PTHNLTSLDL SHSFHNNIGN WNAGSDFIQE 180 LIKAADCFDS NELQVAQVIL ERLNHRHQSP NGKPLQRAAF FFKEALQSLL TTGSTRPQTN 240 PVVPSWSNTV QTIKAYKAFF SISPIPMFTD FTTNQAILDS LNGNSVFLHV IDFDIGFGCH 300 YASLMRELVD KADSCNKITT PLLRITAVVT EDTVIGTKLI KERLSQFAHE LKIRFHVEFV 360 LFPTFEMLSF KAIKFFEGEK IAVLLSPTIF RHLGSTNNVT MFVNDFRRVS PSVVIFVDSE 420 GWTESGARLS FRRNYVNCLE FYSMMFESLD AAVITAGGDW ARKIEMCLLK PKILAAVEGC 480 GRRMVSPWRE VFAGAGMRAV QLSQFADFQA ECLLGKVQVR GFYVAKRQAE LVLCWHDRPL 540 IATSAWKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-23 | 212 | 547 | 37 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G125800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383233.2 | 0.0 | scarecrow-like protein 15 | ||||
Swissprot | O23210 | 1e-159 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
TrEMBL | A0A2K2AFW5 | 0.0 | A0A2K2AFW5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s12730.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5959 | 32 | 52 | Representative plant | OGRP10323 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-161 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G125800.1 |
Entrez Gene | 18099304 |
Publications ? help Back to Top | |||
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