PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G122200.1
Common NamePOPTR_0005s12390g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 86aa    MW: 9613.64 Da    PI: 9.12
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G122200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.5e-091558344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+   +l+ +a +++ ++   +W+ +a+ +g g++++++  ++
  Potri.005G122200.1 15 SWTPKQNKLFEKALALYDKDtpdRWHNVAKAVG-GKSAEEVERHY 58
                        7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.3891166IPR017884SANT domain
SMARTSM007173.8E-81264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-51568IPR009057Homeodomain-like
CDDcd001674.61E-71558No hitNo description
SuperFamilySSF466891.09E-121569IPR009057Homeodomain-like
PfamPF002492.1E-71558IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MASNSLNSSR NCSSSWTPKQ NKLFEKALAL YDKDTPDRWH NVAKAVGGKS AEEVERHYEI  60
LIKDVREIES GRVPFPNYRS SGNSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-33682177RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G122200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383186.18e-58protein RADIALIS-like 3
SwissprotQ6NNN09e-37RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLB9MXN32e-56B9MXN3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s12390.13e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-35RAD-like 1